RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TPX2Q9ULW0 747 aaKnown RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 HPCAL4Q9UM19 191 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 SLC6A14Q9UN76 642 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 FARP1Q9Y4F1 1045 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 SLCO1B1Q9Y6L6 691 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PCNX2A6NKB5 2137 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 LRRK1Q38SD2 2015 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 A0A1B0GTW7 788 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 LATO43561 262 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 TMCC1O94876 653 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CCR5P51681 352 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CCNHP51946 323 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-213ENST00000598355 TAS2R38P59533 333 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CNTN1Q12860 1018 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CARD16Q5EG05 197 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 PPP6R3Q5H9R7 873 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-213ENST00000598355 STPG1Q5TH74 334 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 NCEH1Q6PIU2 408 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CPNE8Q86YQ8 564 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 OR2AP1Q8NGE2 309 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 RFFLQ8WZ73 363 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CSPG4P5Q96PW8 444 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 ZWILCHQ9H900 591 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 CTTNBP2NLQ9P2B4 639 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 IL36AQ9UHA7 158 aa16.43■□□□□ 0.22
TRIM28-213ENST00000598355 LRRC72A6NJI9 287 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 H3BRJ5 948 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 PRAMEF11O60813 436 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 GNSP15586 552 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 ENGP17813 658 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 CD27P26842 260 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 MAOBP27338 520 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 RHOT2Q8IXI1 618 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 RGL4Q8IZJ4 473 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 ZCCHC9Q8N567 271 aaKnown RBP16.42■□□□□ 0.22
TRIM28-213ENST00000598355 LZTR1Q8N653 840 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 ARRDC3Q96B67 414 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 LRIG1Q96JA1 1093 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 PANX2Q96RD6 677 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 HEPHQ9BQS7 1158 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 HDAC8Q9BY41 377 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 TM6SF2Q9BZW4 377 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 SLC39A8Q9C0K1 460 aa16.42■□□□□ 0.22
TRIM28-213ENST00000598355 EIF2B4Q9UI10 523 aaKnown RBP16.42■□□□□ 0.22
TRIM28-213ENST00000598355 A0A1W2PPC4 97 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 PLK4O00444 970 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 BCAT2O15382 392 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-213ENST00000598355 BNIP3LO60238 219 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 LEFTY1O75610 366 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 GJB3O75712 270 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 CFIP05156 583 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 IL4RP24394 825 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 ITGB7P26010 798 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 ARL4AP40617 200 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 RECQLP46063 649 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-213ENST00000598355 GRIA4P48058 902 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 HADHBP55084 474 aaKnown RBP16.41■□□□□ 0.22
TRIM28-213ENST00000598355 TAS2R40P59535 323 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 TRIM69Q86WT6 500 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 SLC35G2Q8TBE7 412 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 GRIN3AQ8TCU5 1115 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 GANCQ8TET4 914 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 HSPH1Q92598 858 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 CELF6Q96J87 481 aaKnown RBP16.41■□□□□ 0.22
TRIM28-213ENST00000598355 EBF2Q9HAK2 575 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 PREBQ9HCU5 417 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 TMEM9BQ9NQ34 198 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 ETNK2Q9NVF9 386 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 LHX3Q9UBR4 397 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 MFHAS1Q9Y4C4 1052 aa16.41■□□□□ 0.22
TRIM28-213ENST00000598355 ARHGAP42A6NI28 874 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 KPNA3O00505 521 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-213ENST00000598355 ARHGAP33O14559 1287 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 BUB1O43683 1085 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 CDC25BP30305 580 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 PAPOLAP51003 745 aaKnown RBP16.4■□□□□ 0.22
TRIM28-213ENST00000598355 SNRPD1P62314 119 aaKnown RBP16.4■□□□□ 0.22
TRIM28-213ENST00000598355 PPP2CBP62714 309 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 PPP2CAP67775 309 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 BNC1Q01954 994 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 GRIK2Q13002 908 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 HADHQ16836 314 aaKnown RBP16.4■□□□□ 0.22
TRIM28-213ENST00000598355 ARSIQ5FYB1 569 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-213ENST00000598355 CCDC170Q8IYT3 715 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 OR14C36Q8NHC7 312 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 FAF2Q96CS3 445 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 PPP1R16AQ96I34 528 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 GDAP1L1Q96MZ0 367 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 ZNF670Q9BS34 389 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 ZDHHC5Q9C0B5 715 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 TM9SF3Q9HD45 589 aa16.4■□□□□ 0.22
TRIM28-213ENST00000598355 J3KR12 359 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 DAPK3O43293 454 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 FSBPO95073 299 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 CD48P09326 243 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 AMPD1P23109 780 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 ARHGAP25P42331 645 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 AFF3P51826 1226 aaKnown RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 CDH6P55285 790 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms