RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 YBEYP58557 167 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 TP53BP1Q12888 1972 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SERINC3Q13530 473 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CAMK2GQ13555 558 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 NOMO1Q15155 1222 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CCNG2Q16589 344 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CYP1B1Q16678 543 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 HNRNPA1L2Q32P51 320 aaKnown RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ZNF528Q3MIS6 628 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 C9orf64Q5T6V5 341 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 AFMIDQ63HM1 303 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 RASSF3Q86WH2 238 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 PGBD3Q8N328 593 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 MNS1Q8NEH6 495 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CARD6Q9BX69 1037 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 HOMER3Q9NSC5 361 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 EBF1Q9UH73 591 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SUN2Q9UH99 717 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SLC25A13Q9UJS0 675 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 HS3ST2Q9Y278 367 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 J3KR12 359 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 HRO43593 1189 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ATP9BO43861 1147 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 SYNCRIPO60506 623 aaKnown RBP15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ZNF821O75541 412 aaPredicted RBP15.27■□□□□ 0.03
TRIM28-207ENST00000597136 MAP3K6O95382 1288 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 NDST2P52849 883 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 BZW1Q7L1Q6 419 aaKnown RBP15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ZNF354CQ86Y25 554 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 CACUL1Q86Y37 369 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 CEP112Q8N8E3 955 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 C12orf50Q8NA57 414 aaPredicted RBP15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ATP11CQ8NB49 1132 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 KDM1BQ8NB78 822 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ZBTB44Q8NCP5 570 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 RLN3Q8WXF3 142 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 MRGPRX1Q96LB2 322 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 OLFM3Q96PB7 478 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 FAM129BQ96TA1 746 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 FRMD8P1Q9BZ68 369 aaPredicted RBP15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ZSCAN32Q9NX65 697 aa15.27■□□□□ 0.03
TRIM28-207ENST00000597136 ZNF292O60281 2723 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 CCDC188H7C350 402 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 DFFAO00273 331 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 AXIN1O15169 862 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 LIASO43766 372 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 BNIP3LO60238 219 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 NNMTP40261 264 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 PTPN5P54829 565 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 EIF3EP60228 445 aaKnown RBP15.26■□□□□ 0.03
TRIM28-207ENST00000597136 SNX1Q13596 522 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 STARD3Q14849 445 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 E2F5Q15329 346 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 TMPRSS6Q8IU80 811 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 STK40Q8N2I9 435 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 SLC35B2Q8TB61 432 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 ATOH1Q92858 354 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-207ENST00000597136 MAGOHBQ96A72 148 aaKnown RBP15.26■□□□□ 0.03
TRIM28-207ENST00000597136 PHOX2BQ99453 314 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 KCNH6Q9H252 994 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 TNKS2Q9H2K2 1166 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 BCCIPQ9P287 314 aaKnown RBP eCLIP15.26■□□□□ 0.03
TRIM28-207ENST00000597136 DNPEPQ9ULA0 475 aa15.26■□□□□ 0.03
TRIM28-207ENST00000597136 FCF1Q9Y324 198 aaKnown RBP15.26■□□□□ 0.03
TRIM28-207ENST00000597136 PTPRZ1P23471 2315 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 EDDM13A0A1B0GTR0 161 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 CTAGE15A4D2H0 777 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 RNF103O00237 685 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 PHF2O75151 1096 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 CTAGE8P0CG41 777 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 ETFBP38117 255 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 VASPP50552 380 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 NRLP54845 237 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 C2orf54Q08AI8 447 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 GALNT2Q10471 571 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 XRCC4Q13426 336 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 BYSLQ13895 437 aaKnown RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 PDK1Q15118 436 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 PARP15Q460N3 678 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 RETSATQ6NUM9 610 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 DRICH1Q6PGQ1 229 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 Q6ZVU0 165 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 CTAGE6Q86UF2 777 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 ZC3H18Q86VM9 953 aaKnown RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 WDR5BQ86VZ2 330 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 LONP2Q86WA8 852 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 CTAGE4Q8IX94 777 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 FAM160A2Q8N612 972 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 LRRN4Q8WUT4 740 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 NKD2Q969F2 451 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 FAM126AQ9BYI3 521 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-207ENST00000597136 HPCAL4Q9UM19 191 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 PLXNA2O75051 1894 aa15.25■□□□□ 0.03
TRIM28-207ENST00000597136 TARSL2A2RTX5 802 aaKnown RBP15.24■□□□□ 0.03
TRIM28-207ENST00000597136 MCF2LO15068 1137 aa15.24■□□□□ 0.03
TRIM28-207ENST00000597136 LILRB5O75023 590 aa15.24■□□□□ 0.03
TRIM28-207ENST00000597136 ALDH1A2O94788 518 aa15.24■□□□□ 0.03
TRIM28-207ENST00000597136 RBP3P10745 1247 aa15.24■□□□□ 0.03
TRIM28-207ENST00000597136 MX2P20592 715 aa15.24■□□□□ 0.03
TRIM28-207ENST00000597136 SERPINH1P50454 418 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms