RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 FAM46CQ5VWP2 391 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 H2AFVQ71UI9 128 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 POLNQ7Z5Q5 900 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 TP53INP2Q8IXH6 220 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 OR2I1PQ8NGU4 316 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 OR2T34Q8NGX1 318 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 OR6K2Q8NGY2 324 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 GRIN3AQ8TCU5 1115 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 TEKT4Q8WW24 435 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 CTNNBL1Q8WYA6 563 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 SNX19Q92543 992 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 TSC1Q92574 1164 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 HSPH1Q92598 858 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 ISG20Q96AZ6 181 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 CCDC42Q96M95 316 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 NCAPGQ9BPX3 1015 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 RTKNQ9BST9 563 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 NUSAP1Q9BXS6 441 aaKnown RBP11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 TM6SF2Q9BZW4 377 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 SLC39A8Q9C0K1 460 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 MIR1-1HGQ9H1L0 117 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 PCDH18Q9HCL0 1135 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 ETNK2Q9NVF9 386 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 CTTNBP2NLQ9P2B4 639 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 UVRAGQ9P2Y5 699 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 SUSD2Q9UGT4 822 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 IL36AQ9UHA7 158 aa11.19□□□□□ -0.62
SHKBP1-206ENST00000595523 AKAP13Q12802 2813 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 A0A1B0GTW7 788 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ZSCAN5CA6NGD5 496 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 LRRC72A6NJI9 287 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 C1QTNF3-AMACRE9PGA6 284 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 J3KR12 359 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 MYO1FO00160 1098 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ARHGAP33O14559 1287 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 BCAT2O15382 392 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 SLC7A4O43246 635 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 BUB1O43683 1085 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 PROSCO94903 275 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 PRNPP04156 253 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 CD48P09326 243 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 SDHBP21912 280 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 IL4RP24394 825 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 CD27P26842 260 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 MAPK8P45983 427 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 PAPOLAP51003 745 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 DNA2P51530 1060 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ARSEP51690 589 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 GEMIN4P57678 1058 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 TAS2R40P59535 323 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 SFSWAPQ12872 951 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 TSR1Q2NL82 804 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ATP13A4Q4VNC1 1196 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 BOLA3Q53S33 107 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ARSIQ5FYB1 569 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ATXN7L2Q5T6C5 722 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 LAYNQ6UX15 382 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 ARHGAP36Q6ZRI8 547 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 RABEPKQ7Z6M1 372 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 PLPP6Q8IY26 295 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 OR2AP1Q8NGE2 309 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 OR14C36Q8NHC7 312 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 FAM71BQ8TC56 605 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 CCDC114Q96M63 670 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 CSPG4P5Q96PW8 444 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 TM9SF3Q9HD45 589 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 TMEM9BQ9NQ34 198 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 LHX3Q9UBR4 397 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 HPCAL4Q9UM19 191 aa11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 FARP1Q9Y4F1 1045 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-206ENST00000595523 TPRP12270 2363 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 A0A1W2PPC4 97 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 KPNA3O00505 521 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 WNT9AO14904 365 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 LATO43561 262 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 PRAMEF11O60813 436 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 GJB3O75712 270 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 MTA2O94776 668 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 LCA5LO95447 670 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 GSRP00390 522 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 GNSP15586 552 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 FECHP22830 423 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 AMPD1P23109 780 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 RECQLP46063 649 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 CCR5P51681 352 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 ZNF135P52742 658 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 GRIK2Q13002 908 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 MMRN1Q13201 1228 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 CYTH1Q15438 398 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 INO80DQ53TQ3 878 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 PARS2Q7L3T8 475 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 DGLUCYQ7Z3D6 616 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 ZNF354CQ86Y25 554 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 MINDY1Q8N5J2 469 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 SLC35G2Q8TBE7 412 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 HEPHQ9BQS7 1158 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 HDAC8Q9BY41 377 aa11.17□□□□□ -0.62
SHKBP1-206ENST00000595523 ZDHHC6Q9H6R6 413 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms