RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ARSIQ5FYB1 569 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 DCAF12L1Q5VU92 463 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 C12orf50Q8NA57 414 aaPredicted RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 KCTD6Q8NC69 237 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 TMIEQ8NEW7 156 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 HEPHQ9BQS7 1158 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 ZNF670Q9BS34 389 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 CALN1Q9BXU9 219 aa14.82□□□□□ -0.04
VRK3-206ENST00000594090 HECAQ9UBI9 543 aaPredicted RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 REXO2Q9Y3B8 237 aaKnown RBP14.82□□□□□ -0.04
VRK3-206ENST00000594090 NUMA1Q14980 2115 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 PATE3B3GLJ2 98 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 KPNA3O00505 521 aaPredicted RBP14.81□□□□□ -0.04
VRK3-206ENST00000594090 LEFTY1O75610 366 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 MAOBP27338 520 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 SERPINB6P35237 376 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 SLC1A1P43005 524 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 CNTN1Q12860 1018 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 WDR45BQ5MNZ6 344 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 ZFYVE27Q5T4F4 411 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 AGBL4Q5VU57 503 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 NCEH1Q6PIU2 408 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 ARHGAP36Q6ZRI8 547 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 TP53INP2Q8IXH6 220 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 RGL4Q8IZJ4 473 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 RYBPQ8N488 228 aaPredicted RBP14.81□□□□□ -0.04
VRK3-206ENST00000594090 ACRBPQ8NEB7 543 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 OR2AP1Q8NGE2 309 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 OR2T34Q8NGX1 318 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 OR6K2Q8NGY2 324 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 OR14C36Q8NHC7 312 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 DNASE2BQ8WZ79 361 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 ZDHHC6Q9H6R6 413 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 SP110Q9HB58 689 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 LHX3Q9UBR4 397 aa14.81□□□□□ -0.04
VRK3-206ENST00000594090 EVLQ9UI08 416 aaPredicted RBP14.81□□□□□ -0.04
VRK3-206ENST00000594090 SDK1Q7Z5N4 2213 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 RCCD1A6NED2 376 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 FAM47DPA6NHR8 397 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 KHNYNO15037 678 aaKnown RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 SLC7A4O43246 635 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 PLRG1O43660 514 aaKnown RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 BUB1BO60566 1050 aaPredicted RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 IGSF6O95976 241 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 RHOAP61586 193 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 CYTH1Q15438 398 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 DUOXA1Q1HG43 343 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 AASDHQ4L235 1098 aaPredicted RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 ANKRD20A8PQ5CZ79 823 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 TRIM61Q5EBN2 209 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 ATXN7L2Q5T6C5 722 aaPredicted RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 KIAA0895LQ68EN5 471 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 RABEPKQ7Z6M1 372 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 MAP7D3Q8IWC1 876 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 SNX19Q92543 992 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 RAPGEF5Q92565 580 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 ARRDC3Q96B67 414 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 BIRC7Q96CA5 298 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 FAF2Q96CS3 445 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 PPP1R16AQ96I34 528 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 GDAP1L1Q96MZ0 367 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 DYRK4Q9NR20 520 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 RXFP3Q9NSD7 469 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.8□□□□□ -0.04
VRK3-206ENST00000594090 HYOU1Q9Y4L1 999 aa14.8□□□□□ -0.04
VRK3-206ENST00000594090 LNP1A1A4G5 178 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 LRRC72A6NJI9 287 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 C10orf142B7Z368 130 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 SPOPO43791 374 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 MFSD11O43934 449 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 FSBPO95073 299 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 COMTP21964 271 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 GKP32189 559 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 GSDMDP57764 484 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 IL10RBQ08334 325 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 PIP5KL1Q5T9C9 394 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 LRRC38Q5VT99 294 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 NCBP2-AS2Q69YL0 99 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 SLC23A3Q6PIS1 610 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 RHOT1Q8IXI2 618 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 PCDH19Q8TAB3 1148 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 CEP76Q8TAP6 659 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 VOPP1Q96AW1 172 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 LRIG1Q96JA1 1093 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 EXOC2Q96KP1 924 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 KDM4CQ9H3R0 1056 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 SUSD2Q9UGT4 822 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 EIF2B4Q9UI10 523 aaKnown RBP14.79□□□□□ -0.04
VRK3-206ENST00000594090 IPO11Q9UI26 975 aaKnown RBP14.79□□□□□ -0.04
VRK3-206ENST00000594090 SALL4Q9UJQ4 1053 aa14.79□□□□□ -0.04
VRK3-206ENST00000594090 RIF1Q5UIP0 2472 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 LRRD1A4D1F6 860 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 PRR5-ARHGAP8B1AHC4 643 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 ZNF487B1APH4 448 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 KRIT1O00522 736 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 GDF9O60383 454 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 PALMO75781 387 aa14.78□□□□□ -0.04
VRK3-206ENST00000594090 POP4O95707 220 aaKnown RBP14.78□□□□□ -0.04
VRK3-206ENST00000594090 KRT1P04264 644 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms