RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 SYN3O14994 580 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 AREL1O15033 823 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CCNDBP1O95273 360 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DRD1P21728 446 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RFC2P35250 354 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SERPINF1P36955 418 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CASRP41180 1078 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HARS2P49590 506 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 COPAP53621 1224 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 GHRHRQ02643 423 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CXCL9Q07325 125 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DUSP8Q13202 625 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CTBP1Q13363 440 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SIM2Q14190 667 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PLA1AQ53H76 456 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 FAM160B1Q5W0V3 765 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SP5Q6BEB4 398 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 JMJD6Q6NYC1 403 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CATSPERGQ6ZRH7 1159 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 USP49Q70CQ1 688 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 BTN2A1Q7KYR7 527 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PPP1R3BQ86XI6 285 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RHOT2Q8IXI1 618 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CCAR2Q8N163 923 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TMEM132CQ8N3T6 1108 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CHCHD4Q8N4Q1 142 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MCUQ8NE86 351 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PIGOQ8TEQ8 1089 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HERVK_113Q902F9 699 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM43Q96BQ3 446 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NAP1L5Q96NT1 182 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 GPHA2Q96T91 129 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NPAS1Q99742 590 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CHCHD6Q9BRQ6 235 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DNAI2Q9GZS0 605 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PAIP1Q9H074 479 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CHST8Q9H2A9 424 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ZBTB26Q9HCK0 441 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NSMCE4AQ9NXX6 385 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ABCB11O95342 1321 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 A0A1B0GUL7 405 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 A6NCN8 305 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PRR23AA6NEV1 266 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SLC15A5A6NIM6 579 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 F8W8V4 182 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 J3KTA2 159 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 IPO5O00410 1097 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NPC1O15118 1278 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF37AP17032 561 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CDH2P19022 906 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SRSF4Q08170 494 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TCF15Q12870 199 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NAA25Q14CX7 972 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SEPT2Q15019 361 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MAPKAPK3Q16644 382 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 IMMTQ16891 758 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SOWAHCQ53LP3 525 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MFSD14BQ5SR56 506 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ATL3Q6DD88 541 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ACAD10Q6JQN1 1059 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 B4GALNT4Q76KP1 1039 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 LRRC8DQ7L1W4 858 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 KRT74Q7RTS7 529 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 KRT77Q7Z794 578 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DIS3L2Q8IYB7 885 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PIK3C3Q8NEB9 887 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RDM1Q8NG50 284 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ESR2Q92731 530 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HTRA1Q92743 480 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 C18orf8Q96DM3 657 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RNF125Q96EQ8 232 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 FAM84BQ96KN1 310 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 AIFM2Q9BRQ8 373 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM54Q9BYV2 358 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MTIF3Q9H2K0 278 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SH3GLB2Q9NR46 395 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 INTS13Q9NVM9 706 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DLL3Q9NYJ7 618 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CLIC5Q9NZA1 410 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PDP2Q9P2J9 529 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF70Q9UC06 446 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PLA2G2DQ9UNK4 145 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 GPR34Q9UPC5 381 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HPSEQ9Y251 543 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PLXNA1Q9UIW2 1896 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 A0A1W2PPC4 97 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 ASB14A6NK59 587 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 SMTNL1A8MU46 457 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 TMEM233B4DJY2 109 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 H0Y3Z8 333 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 QSOX1O00391 747 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF213O14771 459 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 TNPO2O14787 897 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 HOXC11O43248 304 aaPredicted RBP2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 CCNT1O60563 726 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 SNHG28P0DPA3 235 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 TXNP10599 105 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 MX1P20591 662 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 GPTP24298 496 aa2.03□□□□□ -2.08
SMCHD1-211ENST00000584897 LRPAP1P30533 357 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms