RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	TM9SF3	Q9HD45	589 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	OSGEP	Q9NPF4	335 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	GPATCH2L	Q9NWQ4	482 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	NENF	Q9UMX5	172 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	AP4E1	Q9UPM8	1137 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	ACTL7A	Q9Y615	435 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	NBEA	Q8NFP9	2946 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	KNL1	Q8NG31	2342 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	ANKRD36	A6QL64	1941 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	ADAMTS20	P59510	1910 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	ITPR1	Q14643	2758 aa		13.58	□□□□□ -0.24
SREBF1-223	ENST00000584760	WASH4P	A8MWX3	477 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	RNF103	O00237	685 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	PLK4	O00444	970 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	FGF10	O15520	208 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	PLRG1	O43660	514 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	CREB3	O43889	395 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	LRCH4	O75427	683 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	CHRNA3	P32297	505 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	HTR7	P34969	479 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	AFF3	P51826	1226 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	PPP2CB	P62714	309 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	PPP2CA	P67775	309 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	SLC20A2	Q08357	652 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	CNTN1	Q12860	1018 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	POLD3	Q15054	466 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	CA9	Q16790	459 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	POM121L1P	Q3SYA9	428 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	PIP5KL1	Q5T9C9	394 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	SPECC1L	Q69YQ0	1117 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	DPY19L3	Q6ZPD9	716 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	CHST14	Q8NCH0	376 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	OR14C36	Q8NHC7	312 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	LRIG1	Q96JA1	1093 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	ZDHHC5	Q9C0B5	715 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	THAP2	Q9H0W7	228 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	MYO1A	Q9UBC5	1043 aa		13.57	□□□□□ -0.24
SREBF1-223	ENST00000584760	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.57	□□□□□ -0.24	5e-9	■■■□□ 17
SREBF1-223	ENST00000584760		A0A1W2PPC4	97 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	EIF4E1B	A6NMX2	242 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	EIF3CL	B5ME19	914 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	CBFA2T2	O43439	604 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	LAT	O43561	262 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	KDELR3	O43731	214 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	RNF8	O76064	485 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	ZIC2	O95409	532 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	PRNP	P04156	253 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	MIP	P30301	263 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	GRIA4	P48058	902 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	CCR5	P51681	352 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	GEMIN4	P57678	1058 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TAS2R38	P59533	333 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TPI1	P60174	286 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TRIM14	Q14142	442 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	LAYN	Q6UX15	382 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	UMODL1-AS1	Q8N2C9	162 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TMIE	Q8NEW7	156 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	GRIN3A	Q8TCU5	1115 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	VOPP1	Q96AW1	172 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	ISG20	Q96AZ6	181 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	ARRDC3	Q96B67	414 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	SLC6A18	Q96N87	628 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	BBC3	Q96PG8	261 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	EIF3C	Q99613	913 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	DNAJC7	Q99615	494 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	KDM4C	Q9H3R0	1056 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	DHX35	Q9H5Z1	703 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	CATSPERB	Q9H7T0	1116 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	EBF2	Q9HAK2	575 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	IL21R	Q9HBE5	538 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	IL36A	Q9UHA7	158 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	PCSK1N	Q9UHG2	260 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	PCOLCE2	Q9UKZ9	415 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TPX2	Q9ULW0	747 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	FCF1	Q9Y324	198 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	WASF2	Q9Y6W5	498 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	TRPM6	Q9BX84	2022 aa		13.56	□□□□□ -0.24
SREBF1-223	ENST00000584760	CABIN1	Q9Y6J0	2220 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760		A0A1B0GVT2	93 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	KPNA3	O00505	521 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	PRPSAP2	O60256	369 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	CBFA2T3	O75081	653 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	TCF4	P15884	667 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	PCK1	P35558	622 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	RECQL	P46063	649 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	CSNK1E	P49674	416 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	CCNH	P51946	323 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	YBEY	P58557	167 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	PARP15	Q460N3	678 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	ERMARD	Q5T6L9	678 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	ALKBH5	Q6P6C2	394 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	MARCH9	Q86YJ5	346 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	PSTK	Q8IV42	348 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	VSTM4	Q8IW00	320 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	PLPP6	Q8IY26	295 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	NIPA2	Q8N8Q9	360 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms