RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 HLA-DQB2P05538 268 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 SRPRAP08240 638 aaKnown RBP15.52■□□□□ 0.08
SS18-215ENST00000580642 GLULP15104 373 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 POLR2EP19388 210 aaKnown RBP15.52■□□□□ 0.08
SS18-215ENST00000580642 NFKB1P19838 968 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 PSMB4P28070 264 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 GDI1P31150 447 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 NNMTP40261 264 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 LMAN1P49257 510 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 NRLP54845 237 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 ARL4CP56559 192 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 KCTD11Q693B1 232 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 TRIM68Q6AZZ1 485 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 GRAMD4Q6IC98 578 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 NAPEPLDQ6IQ20 393 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 CENPUQ71F23 418 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 Q7L0L9 218 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 ADIPOR2Q86V24 386 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 APCDD1Q8J025 514 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 LRRN4Q8WUT4 740 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 DNASE1L2Q92874 299 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 KXD1Q9BQD3 176 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 PLA2G2FQ9BZM2 168 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 NT5MQ9NPB1 228 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 FAM153AQ9UHL3 310 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 SLC25A13Q9UJS0 675 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 INTS6Q9UL03 887 aaKnown RBP15.52■□□□□ 0.08
SS18-215ENST00000580642 SLC8A2Q9UPR5 921 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 ARIH1Q9Y4X5 557 aaPredicted RBP15.52■□□□□ 0.08
SS18-215ENST00000580642 NUP205Q92621 2012 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 E7ESA3 106 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 NPC1O15118 1278 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 TMCC1O94876 653 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 CD160O95971 181 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 MYBL2P10244 700 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 TSHRP16473 764 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 CR2P20023 1033 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 GJA4P35212 333 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 ECT2LQ008S8 904 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 CYTH1Q15438 398 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 CCDC85BQ15834 202 aaPredicted RBP15.51■□□□□ 0.07
SS18-215ENST00000580642 HIF1AQ16665 826 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 GAB4Q2WGN9 574 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 FUT11Q495W5 492 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 DNAJC21Q5F1R6 531 aaKnown RBP15.51■□□□□ 0.07
SS18-215ENST00000580642 BEND6Q5SZJ8 279 aaPredicted RBP15.51■□□□□ 0.07
SS18-215ENST00000580642 ASTLQ6HA08 431 aaPredicted RBP15.51■□□□□ 0.07
SS18-215ENST00000580642 LRRC8BQ6P9F7 803 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 TRMT10CQ7L0Y3 403 aaKnown RBP15.51■□□□□ 0.07
SS18-215ENST00000580642 CSGALNACT1Q8TDX6 532 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 NUDCD1Q96RS6 583 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 HINFPQ9BQA5 517 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 BRD9Q9H8M2 597 aa15.51■□□□□ 0.07
SS18-215ENST00000580642 C2CD4DB7Z1M9 353 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 ATP8B1O43520 1251 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 ATP9BO43861 1147 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 SNAP91O60641 907 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 TMEM63AO94886 807 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 SERPINF2P08697 491 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 DLDP09622 509 aaKnown RBP15.5■□□□□ 0.07
SS18-215ENST00000580642 CA4P22748 312 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 MAGEA3P43357 314 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 AP1S1P61966 158 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 PFKPQ01813 784 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 GRM3Q14832 879 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 MBLAC2Q68D91 279 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 FBXO38Q6PIJ6 1188 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 CCNJLQ8IV13 435 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 SH2D3CQ8N5H7 860 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 PCDH20Q8N6Y1 951 aaKnown RBP15.5■□□□□ 0.07
SS18-215ENST00000580642 PDCD7Q8N8D1 485 aaKnown RBP15.5■□□□□ 0.07
SS18-215ENST00000580642 ARRDC2Q8TBH0 407 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 USP33Q8TEY7 942 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 ZNF419Q96HQ0 510 aaPredicted RBP15.5■□□□□ 0.07
SS18-215ENST00000580642 ZFYVE19Q96K21 471 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 TTC25Q96NG3 672 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 RBM15Q96T37 977 aaKnown RBP eCLIP15.5■□□□□ 0.07
SS18-215ENST00000580642 NAT9Q9BTE0 207 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 CEP41Q9BYV8 373 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 TXLNGYQ9BZA5 131 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 NEUROG2Q9H2A3 272 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 C8orf33Q9H7E9 229 aaPredicted RBP15.5■□□□□ 0.07
SS18-215ENST00000580642 ARNT2Q9HBZ2 717 aa15.5■□□□□ 0.07
SS18-215ENST00000580642 NYNRINQ9P2P1 1898 aaKnown RBP15.49■□□□□ 0.07
SS18-215ENST00000580642 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.49■□□□□ 0.07
SS18-215ENST00000580642 MAGEB16A2A368 324 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 ALOX15BO15296 676 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 INSIG1O15503 277 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 GSRP00390 522 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 GLDCP23378 1020 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 GRIA2P42262 883 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 TNNT3P45378 269 aaPredicted RBP15.49■□□□□ 0.07
SS18-215ENST00000580642 NPY2RP49146 381 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 RHOAP61586 193 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 ITKQ08881 620 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 GRM2Q14416 872 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 ANKRD22Q5VYY1 191 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 PTCRAQ6ISU1 281 aaPredicted RBP15.49■□□□□ 0.07
SS18-215ENST00000580642 TMC3Q7Z5M5 1100 aa15.49■□□□□ 0.07
SS18-215ENST00000580642 PGBD5Q8N414 524 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms