RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 MYO6Q9UM54 1294 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 CLDN16Q9Y5I7 305 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 IGKV2D-30A0A075B6S6 120 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 FAM157AC9JC47 383 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 EIF3FO00303 357 aaPredicted RBP6.74□□□□□ -1.33
SS18-214ENST00000580003 TPD52L2O43399 206 aaKnown RBP6.74□□□□□ -1.33
SS18-214ENST00000580003 LIASO43766 372 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 SERPINC1P01008 464 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 TKTP29401 623 aaKnown RBP6.74□□□□□ -1.33
SS18-214ENST00000580003 GPR12P47775 334 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 TBL3Q12788 808 aaKnown RBP6.74□□□□□ -1.33
SS18-214ENST00000580003 BIRC3Q13489 604 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 RPE65Q16518 533 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 FSCBQ5H9T9 825 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 FNBP1LQ5T0N5 605 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 PDXDC1Q6P996 788 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 B4GALNT2Q8NHY0 566 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 CD180Q99467 661 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 TMEM204Q9BSN7 226 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 HIPK2Q9H2X6 1198 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 ALKBH4Q9NXW9 302 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 PCDHA7Q9UN72 937 aa6.74□□□□□ -1.33
SS18-214ENST00000580003 SRPRBQ9Y5M8 271 aaKnown RBP6.74□□□□□ -1.33
SS18-214ENST00000580003 SH2D7A6NKC9 451 aaPredicted RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 LACTBL1A8MY62 500 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 VWA5AO00534 786 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 IKBKBO14920 756 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 SMAD6O43541 496 aaKnown RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 RGS14O43566 566 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 EIF3JO75822 258 aaKnown RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 LCATP04180 440 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 T-ENOLP0DO92 83 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 ITGB6P18564 788 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 CD72P21854 359 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 HOXD3P31249 432 aaPredicted RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 NANOS2P60321 138 aaKnown RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 UBE3AQ05086 875 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 TRAF1Q13077 416 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 GPS2Q13227 327 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 SLC18A3Q16572 532 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 MAP3K21Q5TCX8 1036 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 ZNF367Q7RTV3 350 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.73□□□□□ -1.33
SS18-214ENST00000580003 ZNF354CQ86Y25 554 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 APOLD1Q96LR9 279 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 LHPPQ9H008 270 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 MROH8Q9H579 483 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 PTGDR2Q9Y5Y4 395 aa6.73□□□□□ -1.33
SS18-214ENST00000580003 A0A1B0GVT2 93 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 I6L893 689 aaPredicted RBP6.72□□□□□ -1.33
SS18-214ENST00000580003 CLDN7O95471 211 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 ADAP00813 363 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 CHRM4P08173 479 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 CCKARP32238 428 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 NAA25Q14CX7 972 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 ME3Q16798 604 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 NAPEPLDQ6IQ20 393 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 Q6ZSV7 163 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 TMEM163Q8TC26 289 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 CNOT9Q92600 299 aaKnown RBP6.72□□□□□ -1.33
SS18-214ENST00000580003 ZPBPQ9BS86 351 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 TAOK3Q9H2K8 898 aa6.72□□□□□ -1.33
SS18-214ENST00000580003 INAFM1C9JVW0 142 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 HOXC6P09630 235 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 RFX5P48382 616 aaPredicted RBP6.71□□□□□ -1.34
SS18-214ENST00000580003 FBXO43Q4G163 708 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 WDR45BQ5MNZ6 344 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 ATG16L1Q676U5 607 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 BBS12Q6ZW61 710 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 PRR26Q8N8Z3 221 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 OR4N2Q8NGD1 307 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 TBC1D22AQ8WUA7 517 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 MIB2Q96AX9 1013 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 TMEM18Q96B42 140 aa6.71□□□□□ -1.34
SS18-214ENST00000580003 IFT80Q9P2H3 777 aaPredicted RBP6.71□□□□□ -1.34
SS18-214ENST00000580003 HOXA11P31270 313 aaPredicted RBP6.7□□□□□ -1.34
SS18-214ENST00000580003 PMS2P54278 862 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 ARSFP54793 590 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 DSC1Q08554 894 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 ATG9BQ674R7 924 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 IL20RBQ6UXL0 311 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 FAM83HQ6ZRV2 1179 aaPredicted RBP6.7□□□□□ -1.34
SS18-214ENST00000580003 TRILQ7L0X0 811 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 MON1BQ7L1V2 547 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 LRRTM4Q86VH4 590 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 CHD1LQ86WJ1 897 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 CPXCR1Q8N123 301 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 IQCF1Q8N6M8 205 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 MYRIPQ8NFW9 859 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 RASSF8Q8NHQ8 419 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 RAB40AQ8WXH6 277 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.7□□□□□ -1.34
SS18-214ENST00000580003 WDR6Q9NNW5 1121 aaKnown RBP6.7□□□□□ -1.34
SS18-214ENST00000580003 LUZP4Q9P127 313 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 IL36RNQ9UBH0 155 aa6.7□□□□□ -1.34
SS18-214ENST00000580003 FAM90A7PA6NKC0 464 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 FAM90A22PA8MWA6 464 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 FAM90A12PA8MX19 464 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 FAM90A23PA8MXZ1 464 aa6.69□□□□□ -1.34
SS18-214ENST00000580003 PER2O15055 1255 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms