RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PEBP4Q96S96 227 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 DNAJC7Q99615 494 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 TNKS2Q9H2K2 1166 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 DHX35Q9H5Z1 703 aaKnown RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 GAREM1Q9H706 876 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 EBF2Q9HAK2 575 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 GPATCH2LQ9NWQ4 482 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 PCSK1NQ9UHG2 260 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 NENFQ9UMX5 172 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 FCF1Q9Y324 198 aaKnown RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 SLCO1B1Q9Y6L6 691 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 TRPM6Q9BX84 2022 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 EEF2KO00418 725 aaKnown RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 PLK4O00444 970 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 VILLO15195 856 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 LEFTY1O75610 366 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 CYP1A2P05177 515 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 CD59P13987 128 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 HCAR3P49019 387 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 DNA2P51530 1060 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 CCNHP51946 323 aaPredicted RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 NDST2P52849 883 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 SNRPD1P62314 119 aaKnown RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 SERINC3Q13530 473 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 CA9Q16790 459 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 HLA-BQ31612 363 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 POM121L1PQ3SYA9 428 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 BOLA3Q53S33 107 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 CCDC122Q5T0U0 273 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 N4BP2L1Q5TBK1 243 aaPredicted RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 ERN2Q76MJ5 926 aaKnown RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 ADAT2Q7Z6V5 191 aaKnown RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 VSTM4Q8IW00 320 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 NIPA2Q8N8Q9 360 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 OR2AP1Q8NGE2 309 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 OR2I1PQ8NGU4 316 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 ARRDC3Q96B67 414 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 HMCESQ96FZ2 354 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 THAP2Q9H0W7 228 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 HECAQ9UBI9 543 aaPredicted RBP15.11■□□□□ 0.01
SS18-212ENST00000579061 IP6K2Q9UHH9 426 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 DMTF1Q9Y222 760 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 ANKRD6Q9Y2G4 727 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 PCDHGB2Q9Y5G2 931 aa15.11■□□□□ 0.01
SS18-212ENST00000579061 SSU72P8A0A1W2PR75 194 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 BUB1O43683 1085 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 DFNA5O60443 496 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 TPM1P09493 284 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 ITGB7P26010 798 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 CD38P28907 300 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 EIF4A3P38919 411 aaKnown RBP15.1■□□□□ 0.01
SS18-212ENST00000579061 CTSKP43235 329 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 TAS2R38P59533 333 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 PPP2CBP62714 309 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 PPP2CAP67775 309 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 MAPK8IP2Q13387 824 aaPredicted RBP15.1■□□□□ 0.01
SS18-212ENST00000579061 ZNF423Q2M1K9 1284 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 KIF19Q2TAC6 998 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 SLC45A4Q5BKX6 768 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 NAPEPLDQ6IQ20 393 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 DBX2Q6ZNG2 339 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 RFX8Q6ZV50 586 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 ZNF354CQ86Y25 554 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 RNF214Q8ND24 703 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 DEFB124Q8NES8 71 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 GRIN3AQ8TCU5 1115 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 SLC6A18Q96N87 628 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 KCTD15Q96SI1 283 aaPredicted RBP15.1■□□□□ 0.01
SS18-212ENST00000579061 NUP85Q9BW27 656 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 TM6SF2Q9BZW4 377 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 LRRC19Q9H756 370 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 ZNHIT6Q9NWK9 470 aaKnown RBP15.1■□□□□ 0.01
SS18-212ENST00000579061 ACTL7AQ9Y615 435 aa15.1■□□□□ 0.01
SS18-212ENST00000579061 A0A1W2PR77 199 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 ARHGAP42A6NI28 874 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 DAPK3O43293 454 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 AP1G1O43747 822 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 RNGTTO60942 597 aaKnown RBP15.09■□□□□ 0.01
SS18-212ENST00000579061 TMCC1O94876 653 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 POP4O95707 220 aaKnown RBP15.09■□□□□ 0.01
SS18-212ENST00000579061 ERCC2P18074 760 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 KCNA4P22459 653 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 NEK3P51956 506 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 C21orf59P57076 290 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 RAD51Q06609 339 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 DPYSL2Q16555 572 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 SLC18A3Q16572 532 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 TSR1Q2NL82 804 aaKnown RBP15.09■□□□□ 0.01
SS18-212ENST00000579061 SETMARQ53H47 684 aaPredicted RBP15.09■□□□□ 0.01
SS18-212ENST00000579061 ZSCAN30Q86W11 494 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 LZTR1Q8N653 840 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 TEKT4Q8WW24 435 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 SERAC1Q96JX3 654 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 OSBPL1AQ9BXW6 950 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 KLC2Q9H0B6 622 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 ZDHHC6Q9H6R6 413 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 ZWILCHQ9H900 591 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 TM7SF3Q9NS93 570 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 ANAPC7Q9UJX3 599 aa15.09■□□□□ 0.01
SS18-212ENST00000579061 SNX11Q9Y5W9 270 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms