RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZNF333Q96JL9 665 aa5.62□□□□□ -1.51
NUP88-213ENST00000576862 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.62□□□□□ -1.51
NUP88-213ENST00000576862 TAOK3Q9H2K8 898 aa5.62□□□□□ -1.51
NUP88-213ENST00000576862 MROH8Q9H579 483 aa5.62□□□□□ -1.51
NUP88-213ENST00000576862 MRPL44Q9H9J2 332 aaKnown RBP5.62□□□□□ -1.51
NUP88-213ENST00000576862 BAZ1AQ9NRL2 1556 aaPredicted RBP5.62□□□□□ -1.51
NUP88-213ENST00000576862 LDB2O43679 373 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 SERPINC1P01008 464 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 PMS2P54278 862 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 ZP1P60852 638 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 KRTAP1-1Q07627 177 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 BIRC3Q13489 604 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 TMEM95Q3KNT9 176 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 ATG16L1Q676U5 607 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 Q6ZSV7 163 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 ZDHHC17Q8IUH5 632 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 OIT3Q8WWZ8 545 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 RAB40AQ8WXH6 277 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 ATOH1Q92858 354 aaPredicted RBP5.61□□□□□ -1.51
NUP88-213ENST00000576862 SH3KBP1Q96B97 665 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 GGA3Q9NZ52 723 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 NCKIPSDQ9NZQ3 722 aa5.61□□□□□ -1.51
NUP88-213ENST00000576862 INAFM1C9JVW0 142 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 RGS14O43566 566 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 IL1AP01583 271 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CYP1A2P05177 515 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CHRM4P08173 479 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 SNHG28P0DPA3 235 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 GNLYP22749 145 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CNTFP26441 200 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 YWHAQP27348 245 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 HOXA11P31270 313 aaPredicted RBP5.6□□□□□ -1.51
NUP88-213ENST00000576862 PPM1FP49593 454 aaPredicted RBP5.6□□□□□ -1.51
NUP88-213ENST00000576862 THBS3P49746 956 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 SLC18A2Q05940 514 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 TBL3Q12788 808 aaKnown RBP5.6□□□□□ -1.51
NUP88-213ENST00000576862 GPS2Q13227 327 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 ZNF284Q2VY69 593 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 LVRNQ6Q4G3 990 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 ZNF517Q6ZMY9 492 aaPredicted RBP5.6□□□□□ -1.51
NUP88-213ENST00000576862 ZNF367Q7RTV3 350 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CPXCR1Q8N123 301 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CADM3Q8N126 398 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 GHDCQ8N2G8 530 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 HSPH1Q92598 858 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 APOLD1Q96LR9 279 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 WDR6Q9NNW5 1121 aaKnown RBP5.6□□□□□ -1.51
NUP88-213ENST00000576862 RRN3Q9NYV6 651 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 SUFUQ9UMX1 484 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 CNPY2Q9Y2B0 182 aa5.6□□□□□ -1.51
NUP88-213ENST00000576862 A0A1B0GVT2 93 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 SPRY3O43610 288 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 ENO3P13929 434 aaPredicted RBP5.59□□□□□ -1.51
NUP88-213ENST00000576862 RFC1P35251 1148 aaPredicted RBP5.59□□□□□ -1.51
NUP88-213ENST00000576862 THPOP40225 353 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 ARSFP54793 590 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 CDH12P55289 794 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 ROR2Q01974 943 aaKnown RBP5.59□□□□□ -1.51
NUP88-213ENST00000576862 MAPK7Q13164 816 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 TAF12Q16514 161 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 FAM83HQ6ZRV2 1179 aaPredicted RBP5.59□□□□□ -1.51
NUP88-213ENST00000576862 ZNF354CQ86Y25 554 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 TMC8Q8IU68 726 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 EXOC8Q8IYI6 725 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 PRR26Q8N8Z3 221 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 MAELQ96JY0 434 aaKnown RBP5.59□□□□□ -1.51
NUP88-213ENST00000576862 LHPPQ9H008 270 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 EPHX3Q9H6B9 360 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 HSF4Q9ULV5 492 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 PCDHA7Q9UN72 937 aa5.59□□□□□ -1.51
NUP88-213ENST00000576862 UNC13AQ9UPW8 1703 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 FAM90A8PA6NJQ4 464 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 PER2O15055 1255 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 NCAM2O15394 837 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 SMAD6O43541 496 aaKnown RBP5.58□□□□□ -1.52
NUP88-213ENST00000576862 POLBP06746 335 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 FAM90A13PP0C7W8 464 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 FAM90A24PP0C7X0 464 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 ENTPD1P49961 510 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 ABATP80404 500 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.58□□□□□ -1.52
NUP88-213ENST00000576862 Q0VFX4 171 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 RAPGEF1Q13905 1077 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 HNF4GQ14541 408 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 RETSATQ6NUM9 610 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 C17orf99Q6UX52 265 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 RBFAQ8N0V3 343 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 TEX45Q8NA69 505 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 TMEM163Q8TC26 289 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 SLC35F5Q8WV83 523 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 CNOT9Q92600 299 aaKnown RBP5.58□□□□□ -1.52
NUP88-213ENST00000576862 MIB2Q96AX9 1013 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 ELP4Q96EB1 424 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 CD180Q99467 661 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 MVB12BQ9H7P6 319 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 CATSPERBQ9H7T0 1116 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 ENTPD7Q9NQZ7 604 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 PTGDR2Q9Y5Y4 395 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 SMARCA4P51532 1647 aa5.58□□□□□ -1.52
NUP88-213ENST00000576862 MS4A18H0YCH9 400 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms