RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TCAF1Q9Y4C2 921 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 HS3ST4Q9Y661 456 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 SQORQ9Y6N5 450 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 A0A088AWK7 358 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 WASH4PA8MWX3 477 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 PHGDHO43175 533 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 B4GALT3O60512 393 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 CIB2O75838 187 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 VAPBO95292 243 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SBK3P0C264 359 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 OR4Q2P0C623 313 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SLC35E2BP0CK96 405 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 DNAJB1P25685 340 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ARNTP27540 789 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 POLD2P49005 469 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 PAPOLAP51003 745 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 MLLT6P55198 1093 aaPredicted RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 SESN3P58005 492 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ACTR3P61158 418 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SLC12A1Q13621 1099 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SLC39A12Q504Y0 691 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 C6orf163Q5TEZ5 329 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ESRP1Q6NXG1 681 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 RANBP10Q6VN20 620 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 RIPOR1Q6ZS17 1223 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 C14orf80Q86SX3 495 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 DNAJC9Q8WXX5 260 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ZNF333Q96JL9 665 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 C1orf74Q96LT6 269 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SERPINB11Q96P15 392 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ZCWPW1Q9H0M4 648 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 TRMT13Q9NUP7 481 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 NMRK1Q9NWW6 199 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 OSER1Q9NX31 292 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 MPP6Q9NZW5 540 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 FNIP2Q9P278 1114 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 CENPFP49454 3210 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 MEI4A8MW99 385 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 FAM155AB1AL88 458 aaPredicted RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 TK2O00142 265 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 NVLO15381 856 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 CA12O43570 354 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 CABYRO75952 493 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 OAZ2O95190 189 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 MOCS2O96007 188 aaPredicted RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 COL6A2P12110 1019 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ACADSP16219 412 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SAT1P21673 171 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 COPAP53621 1224 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 PRKAA2P54646 552 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SLC25A3Q00325 362 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SREBF2Q12772 1141 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 TSNAXIP1Q2TAA8 658 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 LIPMQ5VYY2 423 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 METTL21CQ5VZV1 264 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 LRRC74BQ6ZQY2 392 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 DENND6AQ8IWF6 608 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SCN4BQ8IWT1 228 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 KIRREL3Q8IZU9 778 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 TTC30BQ8N4P2 665 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 POU5F2Q8N7G0 328 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 TDRD5Q8NAT2 981 aaKnown RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 DTX3LQ8TDB6 740 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 STYXQ8WUJ0 223 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 CMTM5Q96DZ9 223 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 MRGPRX2Q96LB1 330 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 TSNARE1Q96NA8 513 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 DRC3Q9H069 523 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ILKAPQ9H0C8 392 aaPredicted RBP10.22□□□□□ -0.77
VPS53-220ENST00000576149 TREX1Q9NSU2 369 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 ZNF212Q9UDV6 495 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 SCML2Q9UQR0 700 aa10.22□□□□□ -0.77
VPS53-220ENST00000576149 FNDC1Q4ZHG4 1894 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 TARM1B6A8C7 271 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 PMPCBO75439 489 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 DDHD2O94830 711 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 NCF2P19878 526 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 CST5P28325 142 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 CCND3P30281 292 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 ABL2P42684 1182 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 NUMBP49757 651 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 PGGT1BP53609 377 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 MPP1Q00013 466 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 DSC1Q08554 894 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 CTBP1Q13363 440 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 ZRSR2Q15696 482 aaKnown RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 MUM1Q2TAK8 710 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 SLC9B1Q4ZJI4 515 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 CFAP157Q5JU67 520 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 GLB1LQ6UWU2 654 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 RTN4RL1Q86UN2 441 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 MON1AQ86VX9 555 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 ZNF280BQ86YH2 543 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 MYLK4Q86YV6 388 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 SLC41A1Q8IVJ1 513 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 CENPLQ8N0S6 344 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 MAPK15Q8TD08 544 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 SLC39A13Q96H72 371 aa10.21□□□□□ -0.77
VPS53-220ENST00000576149 LBHD1Q9BQE6 289 aaPredicted RBP10.21□□□□□ -0.77
VPS53-220ENST00000576149 FSD1LQ9BXM9 530 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms