RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 SERGEFQ9UGK8 458 aa16.1■□□□□ 0.17
CHD3-215ENST00000572750 SARDHQ9UL12 918 aa16.1■□□□□ 0.17
CHD3-215ENST00000572750 ADGRG1Q9Y653 693 aa16.1■□□□□ 0.17
CHD3-215ENST00000572750 NUMA1Q14980 2115 aa16.1■□□□□ 0.17
CHD3-215ENST00000572750 GRID2IPA4D2P6 1211 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 C3orf70A6NLC5 250 aaPredicted RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 SLC30A4O14863 429 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 MAP3K13O43283 966 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 PRAMEF11O60813 436 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 MAP3K6O95382 1288 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 CTSLP07711 333 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 KDELR1P24390 212 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 SERPINB6P35237 376 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 DNA2P51530 1060 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 RPL6Q02878 288 aaKnown RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 SLC20A2Q08357 652 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 KIF5AQ12840 1032 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 BYSLQ13895 437 aaKnown RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 ELF2Q15723 593 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 TTC31Q49AM3 519 aaPredicted RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 ATXN7L2Q5T6C5 722 aaPredicted RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 PMS2CLQ68D20 193 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 DPY19L3Q6ZPD9 716 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 METTL3Q86U44 580 aaKnown RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 C11orf74Q86VG3 221 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 MAP7D3Q8IWC1 876 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 AADATQ8N5Z0 425 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 LZTR1Q8N653 840 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 DEFB119Q8N690 84 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 PCDH20Q8N6Y1 951 aaKnown RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 PQLC3Q8N755 202 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 OR6K2Q8NGY2 324 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 KRT35Q92764 455 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 TOE1Q96GM8 510 aaKnown RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 EXOC2Q96KP1 924 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 CCDC114Q96M63 670 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 ITM2CQ9NQX7 267 aa16.09■□□□□ 0.17
CHD3-215ENST00000572750 UBA2Q9UBT2 640 aaPredicted RBP16.09■□□□□ 0.17
CHD3-215ENST00000572750 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 CXorf51AA0A1B0GTR3 108 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 A0A1W2PP55 124 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 RNF103O00237 685 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 PLK4O00444 970 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 MCF2LO15068 1137 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 ALOX15BO15296 676 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 ADH1BP00325 375 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 IGLV3-19P01714 112 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 C7P10643 843 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 CD6P30203 668 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 SLC8A1P32418 973 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 RECQLP46063 649 aaPredicted RBP16.08■□□□□ 0.16
CHD3-215ENST00000572750 CCNHP51946 323 aaPredicted RBP16.08■□□□□ 0.16
CHD3-215ENST00000572750 ZBTB16Q05516 673 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 LAIR1Q6GTX8 287 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 DSG4Q86SJ6 1040 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 TMEFF1Q8IYR6 380 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 TXLNBQ8N3L3 684 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 ATPAF2Q8N5M1 289 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 LRRC57Q8N9N7 239 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 PIP4K2CQ8TBX8 421 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 GANCQ8TET4 914 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 RNF25Q96BH1 459 aaPredicted RBP16.08■□□□□ 0.16
CHD3-215ENST00000572750 ZC3H10Q96K80 434 aaKnown RBP16.08■□□□□ 0.16
CHD3-215ENST00000572750 DDX56Q9NY93 547 aaKnown RBP16.08■□□□□ 0.16
CHD3-215ENST00000572750 SDK1Q7Z5N4 2213 aa16.08■□□□□ 0.16
CHD3-215ENST00000572750 RNASEH2AO75792 299 aaKnown RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 PMLP29590 882 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 GKP32189 559 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 CHRNA3P32297 505 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 ACSL1P33121 698 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 PTGER3P43115 390 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 DHPSP49366 369 aaPredicted RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 RHOAP61586 193 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 GBE1Q04446 702 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 SPEM2Q0P670 501 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 PAFAH1B3Q15102 231 aaKnown RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 ODF2Q5BJF6 829 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 CARD16Q5EG05 197 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 MFSD7Q6UXD7 560 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 LPCAT2Q7L5N7 544 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 RYBPQ8N488 228 aaPredicted RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 OR2AP1Q8NGE2 309 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 ISG20Q96AZ6 181 aaKnown RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 RNF157Q96PX1 679 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 GPR174Q9BXC1 333 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 ZDHHC6Q9H6R6 413 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 FBXL12Q9NXK8 326 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 WSB2Q9NYS7 404 aaPredicted RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 LHX3Q9UBR4 397 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 IL36AQ9UHA7 158 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 IPO11Q9UI26 975 aaKnown RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 GMEB2Q9UKD1 530 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 ANGPTL2Q9UKU9 493 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 PPM1HQ9ULR3 514 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 CAPN6Q9Y6Q1 641 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 ATXN2Q99700 1313 aaKnown RBP16.07■□□□□ 0.16
CHD3-215ENST00000572750 ANKRD36A6QL64 1941 aa16.07■□□□□ 0.16
CHD3-215ENST00000572750 C1QTNF3-AMACRE9PGA6 284 aa16.06■□□□□ 0.16
CHD3-215ENST00000572750 KPNA3O00505 521 aaPredicted RBP16.06■□□□□ 0.16
CHD3-215ENST00000572750 NDUFS2O75306 463 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms