RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SLC16A10Q8TF71 515 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 MLPHQ9BV36 600 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 FAM49AQ9H0Q0 323 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 UPF3AQ9H1J1 476 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ZNF385DQ9H6B1 395 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TUT1Q9H6E5 874 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PIGVQ9NUD9 493 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 GDAP2Q9NXN4 497 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 SUCOQ9UBS9 1254 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HES2Q9Y543 173 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 STX16-NPEPL1H3BU86 382 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 DLX3O60479 287 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 CNMDO75829 334 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 PAMP19021 973 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 TKTL1P51854 596 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 USP46P62068 366 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 TRIM25Q14258 630 aaKnown RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 PCID2Q5JVF3 399 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 KCTD11Q693B1 232 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 LILRA2Q8N149 483 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 PPTC7Q8NI37 304 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 GABPB2Q8TAK5 448 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 UNC93B1Q9H1C4 597 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 AAR2Q9Y312 384 aaKnown RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 FIS1Q9Y3D6 152 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 AK5Q9Y6K8 562 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 FAM95CA0A1B0GW59 222 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 FZD9O00144 591 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 SPATA31D3P0C874 917 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 SQLEQ14534 574 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 GJC2Q5T442 439 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 SPATA31D4Q6ZUB0 917 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 ZSCAN18Q8TBC5 510 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 MIPOL1Q8TD10 442 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 NT5C3BQ969T7 300 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 CCDC126Q96EE4 140 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 ELMO2Q96JJ3 720 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 DNAJC1Q96KC8 554 aaKnown RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 SLC2A13Q96QE2 648 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 MRPL57Q9BQC6 102 aaKnown RBP10.9□□□□□ -0.66
CCDC40-207ENST00000572253 KIFC1Q9BW19 673 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 UBP1Q9NZI7 540 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 SCN4AP35499 1836 aa10.9□□□□□ -0.66
CCDC40-207ENST00000572253 PIRO00625 290 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 HNRNPRO43390 633 aaKnown RBP10.9□□□□□ -0.67
CCDC40-207ENST00000572253 ATP5F1P24539 256 aaPredicted RBP10.9□□□□□ -0.67
CCDC40-207ENST00000572253 DCTN2Q13561 401 aaKnown RBP10.9□□□□□ -0.67
CCDC40-207ENST00000572253 APOFQ13790 326 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 SYPL2Q5VXT5 272 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 GK5Q6ZS86 529 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 AMIGO2Q86SJ2 522 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 METTL25Q8N6Q8 603 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 ACVR1CQ8NER5 493 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 KCTD13Q8WZ19 329 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 PPWD1Q96BP3 646 aaKnown RBP10.9□□□□□ -0.67
CCDC40-207ENST00000572253 TEKT5Q96M29 485 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 CAMKK2Q96RR4 588 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 C1QTNF1Q9BXJ1 281 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 EIF2AQ9BY44 585 aaKnown RBP10.9□□□□□ -0.67
CCDC40-207ENST00000572253 OCEL1Q9H607 264 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 ELP3Q9H9T3 547 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 DDIT4Q9NX09 232 aa10.9□□□□□ -0.67
CCDC40-207ENST00000572253 A0A087X1B8 175 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TCAF2A6NFQ2 919 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ACOT8O14734 319 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TRMUO75648 421 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 RNASEH2AO75792 299 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 F9P00740 461 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SLC35E2BP0CK96 405 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 TKTP29401 623 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CD68P34810 354 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 IREB2P48200 963 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 CDKL1Q00532 357 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 NSUN2Q08J23 767 aaKnown RBP eCLIP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 NRF1Q16656 503 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 USP41Q3LFD5 358 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 OTUD1Q5VV17 481 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PKN3Q6P5Z2 889 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 HOMEZQ8IX15 550 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 PCDH20Q8N6Y1 951 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ATP6V1E2Q96A05 226 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 MOCOSQ96EN8 888 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 KLHL32Q96NJ5 620 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 R3HDMLQ9H3Y0 253 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 GALNT8Q9NY28 637 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 MYRFQ9Y2G1 1151 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 A0A0G2JLL6 359 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 KCNU1A8MYU2 1149 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 IRF6O14896 467 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 UBDO15205 165 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ANXA9O76027 345 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SRP72O76094 671 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 STX1BP61266 288 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 HPCAP84074 193 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 GALNT2Q10471 571 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 SCAPQ12770 1279 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 ZBTB17Q13105 803 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 FASTKQ14296 549 aaKnown RBP10.89□□□□□ -0.67
CCDC40-207ENST00000572253 MGAT5BQ3V5L5 792 aa10.89□□□□□ -0.67
CCDC40-207ENST00000572253 IL23RQ5VWK5 629 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms