RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	TSHR	P16473	764 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	CCKBR	P32239	447 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	IRAK1	P51617	712 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	CENPC	Q03188	943 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	SYPL2	Q5VXT5	272 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	ERICH6B	Q5W0A0	696 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	SHC4	Q6S5L8	630 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	PHACTR4	Q8IZ21	702 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	TTC39C	Q8N584	583 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	TMIE	Q8NEW7	156 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	GRIN3A	Q8TCU5	1115 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	SLC35F5	Q8WV83	523 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	BTN2A2	Q8WVV5	523 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	RNF34	Q969K3	372 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	TMEM74	Q96NL1	305 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	LRRN3	Q9H3W5	708 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	TMEM8A	Q9HCN3	771 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	TUBD1	Q9UJT1	453 aa		12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.02	□□□□□ -0.49
CLK3-222	ENST00000568232	MORC2	Q9Y6X9	1032 aa	Predicted RBP	12.02	□□□□□ -0.49
CLK3-222	ENST00000568232		A0A1W2PQ27	194 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232		A0A1W2PQ64	194 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232		A0A1W2PQC6	194 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	IGLON5	A6NGN9	336 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232		F5H5T6	163 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	POLR2D	O15514	142 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	SMAD6	O43541	496 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	KLRC4	O43908	158 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	CALCA	P01258	141 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	POU3F2	P20265	443 aa	Predicted RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	UQCRFS1	P47985	274 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	PFN3	P60673	137 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	RPS21	P63220	83 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	CCDC15	Q0P6D6	951 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	RABEP1	Q15276	862 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	KRT39	Q6A163	491 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	INTS8	Q75QN2	995 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	TMPRSS9	Q7Z410	1059 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232		Q8N9G6	341 aa	Predicted RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	TFAP2B	Q92481	460 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	FEM1C	Q96JP0	617 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	PRMT1	Q99873	361 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	HDAC8	Q9BY41	377 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	RAB20	Q9NX57	234 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	VPS28	Q9UK41	221 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	OR51B4	Q9Y5P0	310 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	FADS3	Q9Y5Q0	445 aa		12.01	□□□□□ -0.49
CLK3-222	ENST00000568232	ICE1	Q9Y2F5	2266 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232		A1L4Q6	167 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	TCAF2	A6NFQ2	919 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	SNAP91	O60641	907 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ENDOD1	O94919	500 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	AGFG2	O95081	481 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	APOE	P02649	317 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	RNF224	P0DH78	156 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	VDR	P11473	427 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	KRT13	P13646	458 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	LIF	P15018	202 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	RRM1	P23921	792 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	CD97	P48960	835 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	MLLT10	P55197	1068 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	PITX1	P78337	314 aa	Predicted RBP	12	□□□□□ -0.49
CLK3-222	ENST00000568232	ZFP36L1	Q07352	338 aa	Known RBP	12	□□□□□ -0.49
CLK3-222	ENST00000568232	SGCG	Q13326	291 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	NNT	Q13423	1086 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	STK38	Q15208	465 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	FAXC	Q5TGI0	409 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ZNF787	Q6DD87	383 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	KIAA1161	Q6NSJ0	714 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	FAM186B	Q8IYM0	893 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ARL10	Q8N8L6	244 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ATP11C	Q8NB49	1132 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	LINC00301	Q8NCQ3	95 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	FBXL13	Q8NEE6	735 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	PCDH19	Q8TAB3	1148 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	C9orf43	Q8TAL5	461 aa	Predicted RBP	12	□□□□□ -0.49
CLK3-222	ENST00000568232	NKD1	Q969G9	470 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	FAM149B1	Q96BN6	582 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	BTN2A3P	Q96KV6	586 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ZSWIM1	Q9BR11	485 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	TNKS2	Q9H2K2	1166 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	TMPRSS4	Q9NRS4	437 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	IL36A	Q9UHA7	158 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	DAAM1	Q9Y4D1	1078 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	ABCA12	Q86UK0	2595 aa		12	□□□□□ -0.49
CLK3-222	ENST00000568232	SCN8A	Q9UQD0	1980 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	KCNU1	A8MYU2	1149 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	MAPK13	O15264	365 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	LEFTY1	O75610	366 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	PRNP	P04156	253 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	KRT7	P08729	469 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	ADRB3	P13945	408 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	NR2F2	P24468	414 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	COL8A1	P27658	744 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	NASP	P49321	788 aa	Predicted RBP	11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	ARSD	P51689	593 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	NEK3	P51956	506 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	THOP1	P52888	689 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	FBXL22	Q6P050	247 aa		11.99	□□□□□ -0.49
CLK3-222	ENST00000568232	LCLAT1	Q6UWP7	414 aa		11.99	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms