RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZNF564Q8TBZ8 553 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 TEKT4Q8WW24 435 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 BIRC7Q96CA5 298 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 LRIG1Q96JA1 1093 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 KCTD15Q96SI1 283 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 HEPHQ9BQS7 1158 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 TNKS2Q9H2K2 1166 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 NHEJ1Q9H9Q4 299 aaPredicted RBP13.65□□□□□ -0.22
CLK3-216ENST00000564468 RXFP3Q9NSD7 469 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 GPATCH2LQ9NWQ4 482 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 SERGEFQ9UGK8 458 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 NENFQ9UMX5 172 aa13.65□□□□□ -0.22
CLK3-216ENST00000564468 BAHCC1Q9P281 2608 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3DA0A087WVF3 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3IA0A087WXS9 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3EA0A087X179 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3KA0A087X1G2 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3FA6NER0 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 C4orf47A7E2U8 309 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3LB9A6J9 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 KPNA3O00505 521 aaPredicted RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 GSRP00390 522 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TMEM253P0C7T8 217 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3HP0C7X1 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 NUDT1P36639 197 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 SSR1P43307 286 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 AFF3P51826 1226 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 ADPRHP54922 357 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 RAD51Q06609 339 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBX2Q13207 712 aaPredicted RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 SERINC3Q13530 473 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 DPYSL2Q16555 572 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 CA9Q16790 459 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3GQ6DHY5 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3CQ6IPX1 549 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 IL27RAQ6UWB1 636 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 DPY19L3Q6ZPD9 716 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 TBC1D3Q8IZP1 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 ZCCHC9Q8N567 271 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 FAM131CQ96AQ9 280 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 SKA1Q96BD8 255 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 ARHGEF26Q96DR7 871 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 CHP1Q99653 195 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 GTPBP2Q9BX10 602 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 NOL6Q9H6R4 1146 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 SARDHQ9UL12 918 aa13.64□□□□□ -0.23
CLK3-216ENST00000564468 FCF1Q9Y324 198 aaKnown RBP13.64□□□□□ -0.23
CLK3-216ENST00000564468 TMEM131Q92545 1883 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 LAMA1P25391 3075 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 A0A1W2PPC4 97 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 CDX4O14627 284 aaPredicted RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 PLRG1O43660 514 aaKnown RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 OPHN1O60890 802 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 POP4O95707 220 aaKnown RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 CD160O95971 181 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 ERCC2P18074 760 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 CCNHP51946 323 aaPredicted RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 CNTN1Q12860 1018 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 ARSIQ5FYB1 569 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 NEK5Q6P3R8 708 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 CYP4V2Q6ZWL3 525 aaPredicted RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 PRPF39Q86UA1 669 aaKnown RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 RHOT2Q8IXI1 618 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 RYBPQ8N488 228 aaPredicted RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 CHST14Q8NCH0 376 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 OR2AP1Q8NGE2 309 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 HSPH1Q92598 858 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 HMCESQ96FZ2 354 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 MRFAP1L1Q96HT8 127 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 OSBPL1AQ9BXW6 950 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 RBSNQ9H1K0 784 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 LRRC19Q9H756 370 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 PREBQ9HCU5 417 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLK3-216ENST00000564468 CWC15Q9P013 229 aaKnown RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 HECAQ9UBI9 543 aaPredicted RBP13.63□□□□□ -0.23
CLK3-216ENST00000564468 INTUQ9ULD6 942 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 ASPMQ8IZT6 3477 aa13.63□□□□□ -0.23
CLK3-216ENST00000564468 ANKRD11Q6UB99 2663 aaPredicted RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 ZNF821O75541 412 aaPredicted RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 LEFTY1O75610 366 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 PROSCO94903 275 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 CER1O95813 267 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 IGSF6O95976 241 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 IGHV4-34P06331 123 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 PROS1P07225 676 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 CTSLP07711 333 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 RARAP10276 462 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 IL1R2P27930 398 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 SERPINB6P35237 376 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 MAPK8P45983 427 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 GRIA4P48058 902 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 RHOAP61586 193 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 RACK1P63244 317 aaKnown RBP13.62□□□□□ -0.23
CLK3-216ENST00000564468 KRT81Q14533 505 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 GRM3Q14832 879 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 SMTNL2Q2TAL5 461 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 UAP1L1Q3KQV9 507 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 POM121L1PQ3SYA9 428 aa13.62□□□□□ -0.23
CLK3-216ENST00000564468 SLC45A4Q5BKX6 768 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms