RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NKD2Q969F2 451 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 MAGOHBQ96A72 148 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 LRIG1Q96JA1 1093 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CAPZA3Q96KX2 299 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 MRGPRX3Q96LB0 322 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 GDAP1L1Q96MZ0 367 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 QKIQ96PU8 341 aaKnown RBP eCLIP9.39□□□□□ -0.91
LDLR-210ENST00000559340 PSKH2Q96QS6 385 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 LGMNQ99538 433 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 GABRG3Q99928 467 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 TMEM245Q9H330 911 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 PDFQ9HBH1 243 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 RBM22Q9NW64 420 aaKnown RBP eCLIP9.39□□□□□ -0.914e-8■□□□□ 9.5
LDLR-210ENST00000559340 SEPT10Q9P0V9 454 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SAE1Q9UBE0 346 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 SLCO3A1Q9UIG8 710 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CDC23Q9UJX2 597 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SPAG17Q6Q759 2223 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 A0A1W2PQ67 120 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 GOLGA6CA6NDK9 693 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 GOLGA6BA6NDN3 693 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TTC34A8MYJ7 566 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 C1QTNF3-AMACRE9PGA6 284 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 KCNN4O15554 427 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 LIASO43766 372 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 MAP3K6O95382 1288 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 MT-CO1P00395 513 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 JCHAINP01591 159 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 PRNPP04156 253 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 ITGAVP06756 1048 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 GOLGA6DP0CG33 693 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 CA4P22748 312 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 NFKBIAP25963 317 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 IL12RB1P42701 662 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TNNT3P45378 269 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 CXCL12P48061 93 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 STK19P49842 368 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 NUBP1P53384 320 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 ITKQ08881 620 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 MESP2Q0VG99 397 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 FZD5Q13467 585 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 CAMK2GQ13555 558 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 PRPSAP1Q14558 356 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 CYTH1Q15438 398 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 WHAMMP3Q1A5X7 153 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TEX44Q53QW1 395 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 C22orf39Q6P5X5 142 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 ARHGAP36Q6ZRI8 547 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 GSTA5Q7RTV2 222 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 PID1Q7Z2X4 250 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 CREG2Q8IUH2 290 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TP53INP2Q8IXH6 220 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 CAMKK1Q8N5S9 505 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 NETO2Q8NC67 525 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 OR2AP1Q8NGE2 309 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 OR2T3Q8NH03 318 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 C1orf54Q8WWF1 131 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 EZH1Q92800 747 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 MS4A14Q96JA4 679 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 IL12RB2Q99665 862 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 HEPHQ9BQS7 1158 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 OSBPL1AQ9BXW6 950 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 POLR1EQ9GZS1 481 aaKnown RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 IRF2BPLQ9H1B7 796 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 RBM12Q9NTZ6 932 aaKnown RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 CACNA2D2Q9NY47 1150 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 GOLGA6AQ9NYA3 693 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 KLHL8Q9P2G9 620 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 HECAQ9UBI9 543 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 DNPEPQ9ULA0 475 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 SCML1Q9UN30 329 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 FCF1Q9Y324 198 aaKnown RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 MTF2Q9Y483 593 aaPredicted RBP9.38□□□□□ -0.91
LDLR-210ENST00000559340 CEP192Q8TEP8 1941 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TRPM6Q9BX84 2022 aa9.38□□□□□ -0.91
LDLR-210ENST00000559340 TCRBV7S2A1N4TA0A589 114 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 C5orf60A6NFR6 353 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SGK1O00141 431 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 ZNF185O15231 689 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PSMD3O43242 534 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SMAD6O43541 496 aaKnown RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 BNIP3LO60238 219 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 OPHN1O60890 802 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 PHF2O75151 1096 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CD160O95971 181 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 GAS8O95995 478 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 DCNP07585 359 aaKnown RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 PRKCHP24723 683 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 RBL1P28749 1068 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CHRNA3P32297 505 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 WASP42768 502 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 FNTAP49354 379 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 AP1S1P61966 158 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 ZBTB16Q05516 673 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SLC10A7Q0GE19 358 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 SNX1Q13596 522 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 ELAVL3Q14576 367 aaKnown RBP9.37□□□□□ -0.91
LDLR-210ENST00000559340 CRY1Q16526 586 aa9.37□□□□□ -0.91
LDLR-210ENST00000559340 CYP1B1Q16678 543 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms