RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CCDC17Q96LX7 622 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 COQ10AQ96MF6 247 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 FCRL5Q96RD9 977 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 TREX2Q9BQ50 279 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 NUDT16L1Q9BRJ7 211 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 EFHD1Q9BUP0 239 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 NPLQ9BXD5 320 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 NUF2Q9BZD4 464 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 MUC13Q9H3R2 512 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 POLR1BQ9H9Y6 1135 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ZNF304Q9HCX3 659 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 EIF2B3Q9NR50 452 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 GAR1Q9NY12 217 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 TFCP2L1Q9NZI6 479 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 IL1RAPL1Q9NZN1 696 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 HCN3Q9P1Z3 774 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 PLEKHB1Q9UF11 243 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 LIMA1Q9UHB6 759 aaKnown RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 ZNF215Q9UL58 517 aaPredicted RBP1.76□□□□□ -2.13
USP3-209ENST00000558925 ICKQ9UPZ9 632 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 OSGIN2Q9Y236 505 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 DTX4Q9Y2E6 619 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 ADAM18Q9Y3Q7 739 aa1.76□□□□□ -2.13
USP3-209ENST00000558925 RSF1Q96T23 1441 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 AOX1Q06278 1338 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ADGRF5Q8IZF2 1346 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 C17orf113A0A1B0GUU1 675 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 FAM237BA0A1B0GVD1 139 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 A0A1W2PQF6 199 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CCDC151A5D8V7 595 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 OR6C68A6NDL8 312 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 DDTLA6NHG4 134 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 CBY3A6NI87 242 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 LRRC3CA6NJW4 275 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 BTBD18B2RXH4 712 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TARM1B6A8C7 271 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 KCNJ18B7U540 433 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 H7C1Q1 480 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 GCOM1H8Y6P7 765 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 GTPBP1O00178 669 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 P4HA2O15460 535 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 STRNO43815 780 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ORC4O43929 436 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 HBP1O60381 514 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TMCC2O75069 709 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 PGM3O95394 542 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 SGPL1O95470 568 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 SERPINC1P01008 464 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 WNT1P04628 370 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ENO1P06733 434 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 TUBBP07437 444 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CYP2A6P11509 494 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 AKR1A1P14550 325 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ALOX12P18054 663 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 RPS6KB1P23443 525 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 NFKBIAP25963 317 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 KLRC2P26717 231 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TTKP33981 857 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 BSGP35613 385 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ARL3P36405 182 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TMPRSS3P57727 454 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CLDN2P57739 230 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 SNX16P57768 344 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 PROK1P58294 105 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CREB5Q02930 508 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 MAMLD1Q13495 774 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 PKP1Q13835 747 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 GALNT3Q14435 633 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CCNG2Q16589 344 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 PROSER3Q2NL68 480 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 COL28A1Q2UY09 1125 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 AKNAD1Q5T1N1 836 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 NAA35Q5VZE5 725 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ARMC3Q5W041 872 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TBC1D9BQ66K14 1250 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TTLL5Q6EMB2 1281 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ZNF425Q6IV72 752 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 LRRC8EQ6NSJ5 796 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 CDC73Q6P1J9 531 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 VSTM1Q6UX27 236 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 RBM44Q6ZP01 1051 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 SLC46A3Q7Z3Q1 461 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TADA2BQ86TJ2 420 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 GPAT4Q86UL3 456 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ARHGEF25Q86VW2 580 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TDRPQ86YL5 185 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TMTC2Q8N394 836 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 C17orf53Q8N3J3 647 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 CPXM2Q8N436 756 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 SRBD1Q8N5C6 995 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 FRMD1Q8N878 549 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 LSMEM1Q8N8F7 131 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TMEM116Q8NCL8 245 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 C1orf131Q8NDD1 294 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 PIGKQ92643 395 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 ATOH1Q92858 354 aaPredicted RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 INTS12Q96CB8 462 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 FAM120BQ96EK7 910 aaKnown RBP1.75□□□□□ -2.13
USP3-209ENST00000558925 C5orf34Q96MH7 638 aa1.75□□□□□ -2.13
USP3-209ENST00000558925 TIGD1Q96MW7 591 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms