RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	RAD51B	O15315	384 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	ARHGAP6	O43182	974 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	TCEA3	O75764	348 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	ENDOD1	O94919	500 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	GNA14	O95837	355 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	AFP	P02771	609 aa	Known RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	ADRB3	P13945	408 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	CD44	P16070	742 aa	Known RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	JUND	P17535	347 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	L1CAM	P32004	1257 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	NOS2	P35228	1153 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	RPIA	P49247	311 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	SLC20A2	Q08357	652 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	PDE1C	Q14123	709 aa	Predicted RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	DEFB133	Q30KQ1	61 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	ALF	Q53S48	1182 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	TTI2	Q6NXR4	508 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	LRRC31	Q6UY01	552 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	ZSCAN30	Q86W11	494 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	TRIM59	Q8IWR1	403 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	DCAF4L2	Q8NA75	395 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	WDR36	Q8NI36	951 aa	Known RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	GRIN3A	Q8TCU5	1115 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	LMX1A	Q8TE12	382 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	BTN2A2	Q8WVV5	523 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	GLMN	Q92990	594 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	IL12RB2	Q99665	862 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	SRRT	Q9BXP5	876 aa	Known RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	TKTL2	Q9H0I9	626 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	FADS3	Q9Y5Q0	445 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	DOCK9	Q9BZ29	2069 aa		12.92	□□□□□ -0.34
SHMT2-223	ENST00000556689	GOLGA6L4	A6NEF3	574 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	DRGX	A6NNA5	263 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	AP1G1	O43747	822 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	TNFSF15	O95150	251 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	ADCY5	O95622	1261 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	OR1E1	P30953	314 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	USP8	P40818	1118 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	MLLT3	P42568	568 aa	Predicted RBP	12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	DNA2	P51530	1060 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	SNX16	P57768	344 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	SLC6A3	Q01959	620 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	ZSCAN23	Q3MJ62	389 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	ARL13B	Q3SXY8	428 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	BRMS1L	Q5PSV4	323 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	KLHL10	Q6JEL2	608 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	RETSAT	Q6NUM9	610 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	C22orf39	Q6P5X5	142 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	CRTC1	Q6UUV9	634 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	FAM183BP	Q6ZVS7	135 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	WDR48	Q8TAF3	677 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	FAM81B	Q96LP2	452 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	CCNL2	Q96S94	520 aa	Predicted RBP	12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	HEPH	Q9BQS7	1158 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	SPON2	Q9BUD6	331 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	PIGV	Q9NUD9	493 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	ARHGEF38	Q9NXL2	777 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	RRN3	Q9NYV6	651 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	CHMP5	Q9NZZ3	219 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	SPAST	Q9UBP0	616 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	WASF2	Q9Y6W5	498 aa		12.91	□□□□□ -0.34
SHMT2-223	ENST00000556689	BICDL2	A1A5D9	508 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	IGLON5	A6NGN9	336 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	MUSK	O15146	869 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	SPINT1	O43278	529 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ZNF821	O75541	412 aa	Predicted RBP	12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	F9	P00740	461 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ITGB7	P26010	798 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	CXCR3	P49682	368 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PFN3	P60673	137 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	EIF2B5	Q13144	721 aa	Known RBP	12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	CLN3	Q13286	438 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PTK2B	Q14289	1009 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ARHGAP44	Q17R89	818 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	CARD16	Q5EG05	197 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PERM1	Q5SV97	790 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ACBD5	Q5T8D3	534 aa	Predicted RBP	12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	FOXR2	Q6PJQ5	311 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	OLFML1	Q6UWY5	402 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	SLC26A9	Q7LBE3	791 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PRICKLE2	Q7Z3G6	844 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	TFAP2D	Q7Z6R9	452 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	CLEC14A	Q86T13	490 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PASD1	Q8IV76	773 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ZNF683	Q8IZ20	524 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	NELFB	Q8WX92	580 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	ASB12	Q8WXK4	309 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	NAT6	Q93015	286 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	C1orf74	Q96LT6	269 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	NPY6R	Q99463	290 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	KLF6	Q99612	283 aa	Predicted RBP	12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	BOC	Q9BWV1	1114 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	C1QTNF2	Q9BXJ5	285 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	CEP44	Q9C0F1	390 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	MPP6	Q9NZW5	540 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	MAN1B1	Q9UKM7	699 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	PCDHGC3	Q9UN70	934 aa		12.9	□□□□□ -0.34
SHMT2-223	ENST00000556689	SNX10	Q9Y5X0	201 aa		12.9	□□□□□ -0.34

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