RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 BBS5Q8N3I7 341 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 PGBD5Q8N414 524 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 PRELID2Q8N945 189 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 TSEN2Q8NCE0 465 aaKnown RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 OR2A12Q8NGT7 310 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 NKD2Q969F2 451 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-209ENST00000553949 ERLEC1Q96DZ1 483 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 IL12RB2Q99665 862 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 TM6SF2Q9BZW4 377 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 C11orf16Q9NQ32 467 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 HOMER3Q9NSC5 361 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 RBM22Q9NW64 420 aaKnown RBP eCLIP12.44□□□□□ -0.421e-9■■■■□ 20
SHMT2-209ENST00000553949 C2orf42Q9NWW7 574 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 SEPT10Q9P0V9 454 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 LHX3Q9UBR4 397 aa12.44□□□□□ -0.42
SHMT2-209ENST00000553949 MUC22E2RYF6 1773 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 NYNRINQ9P2P1 1898 aaKnown RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 GOLGA6L10A0A0M3HER8 536 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 RNF103O00237 685 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 PDE2AO00408 941 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 KRIT1O00522 736 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 MUSKO15146 869 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 KCNN4O15554 427 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 BNIP3LO60238 219 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 ZNF500O60304 480 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 ZNF189O75820 626 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 NEBLO76041 1014 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 GSRP00390 522 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 PTPN3P26045 913 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 HSPA9P38646 679 aaKnown RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 PAFAH1B1P43034 410 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 RECQLP46063 649 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 DGKEP52429 567 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 SNRPD1P62314 119 aaKnown RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 WASHC5Q12768 1159 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 OASLQ15646 514 aaKnown RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 CARD16Q5EG05 197 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 ATXN7L2Q5T6C5 722 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 DRICH1Q6PGQ1 229 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 MAMSTRQ6ZN01 415 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 DPY19L3Q6ZPD9 716 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 PLPP6Q8IY26 295 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 STK40Q8N2I9 435 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 RYBPQ8N488 228 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 OR2AP1Q8NGE2 309 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 KIF18AQ8NI77 898 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 EXOC2Q96KP1 924 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 CCDC114Q96M63 670 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 GDAP1L1Q96MZ0 367 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 FERMT1Q9BQL6 677 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 MGME1Q9BQP7 344 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 CEP41Q9BYV8 373 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 USP29Q9HBJ7 922 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 CD248Q9HCU0 757 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 NT5MQ9NPB1 228 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 SPATA6Q9NWH7 488 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 HECAQ9UBI9 543 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-209ENST00000553949 AMACRQ9UHK6 382 aa12.43□□□□□ -0.42
SHMT2-209ENST00000553949 TCRBV21S2A2A0A5A6 115 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CFAP69A5D8W1 941 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 GPR37L1O60883 481 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 URI1O94763 535 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 IGSF6O95976 241 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 HLA-DQB2P05538 268 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 ITGAVP06756 1048 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 RGRP47804 291 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CXCL12P48061 93 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CSNK1DP48730 415 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CCR3P51677 355 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CCNHP51946 323 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 MAXP61244 160 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 SATB1Q01826 763 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 NSUN2Q08J23 767 aaKnown RBP eCLIP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 ELAVL3Q14576 367 aaKnown RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CYP1B1Q16678 543 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 MYLK3Q32MK0 819 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 TEX44Q53QW1 395 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 FAM182AQ5T1J6 154 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CNTD1Q8N815 330 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 FAM71DQ8N9W8 422 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 C12orf50Q8NA57 414 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CHST14Q8NCH0 376 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 OR6K2Q8NGY2 324 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 OR2T3Q8NH03 318 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 OR8D1Q8WZ84 308 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 MAGOHBQ96A72 148 aaKnown RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 TEKT5Q96M29 485 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 AGAP3Q96P47 875 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 VAT1Q99536 393 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 TMEM121Q9BTD3 319 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 POLR1EQ9GZS1 481 aaKnown RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 POLMQ9NP87 494 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 HAUS2Q9NVX0 235 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 CDC23Q9UJX2 597 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 ZNF148Q9UQR1 794 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 DRG1Q9Y295 367 aaKnown RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 ATP8A1Q9Y2Q0 1164 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-209ENST00000553949 TTLL3Q9Y4R7 772 aa12.42□□□□□ -0.42
SHMT2-209ENST00000553949 NUP205Q92621 2012 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms