RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PRKCGP05129 697 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 DNAJB1P25685 340 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 HNRNPDQ14103 355 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SEPT6Q14141 434 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ANO4Q32M45 955 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ESRP1Q6NXG1 681 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 KDELC1Q6UW63 502 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 GAREM2Q75VX8 874 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 CMC1Q7Z7K0 106 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 KLHDC8BQ8IXV7 354 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 NDUFAF2Q8N183 169 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC22A17Q8WUG5 538 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 OVCA2Q8WZ82 227 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 NSMCE3Q96MG7 304 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SMG9Q9H0W8 520 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SOX13Q9UN79 622 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SZT2Q5T011 3432 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 UNC80Q8N2C7 3258 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 CCL22O00626 93 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 COPEO14579 308 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 KRT38O76015 456 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 USP1O94782 785 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 BAIAP3O94812 1187 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ARHGEF15O94989 841 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ZWINTO95229 277 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 HSPA1AP0DMV8 641 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 HSPA1BP0DMV9 641 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 HOXD9P28356 352 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 RENBPP51606 427 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 KPNA1P52294 538 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 GEMP55040 296 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SMAD3P84022 425 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 SEPT7Q16181 437 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 IL31Q6EBC2 164 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 C16orf46Q6P387 395 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 KCNMB4Q86W47 210 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 IMP4Q96G21 291 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 TRMT2BQ96GJ1 504 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 CABS1Q96KC9 395 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 IL22Q9GZX6 179 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 CAB39LQ9H9S4 337 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 RRP15Q9Y3B9 282 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ITGA2BP08514 1039 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CTSAP10619 480 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 MYOGP15173 224 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 GABRR2P28476 465 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ETV4P43268 484 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 NPY2RP49146 381 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 HTRA4P83105 476 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 LBRQ14739 615 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PDK4Q16654 411 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 FSCBQ5H9T9 825 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 TMEM240Q5SV17 173 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 TEDDM1Q5T9Z0 273 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PLPP4Q5VZY2 271 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 C6orf89Q6UWU4 347 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 STRA8Q7Z7C7 330 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 C7orf61Q8IZ16 206 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 MAB21L3Q8N8X9 362 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CDK5RAP1Q96SZ6 601 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 NAT9Q9BTE0 207 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC25A51Q9H1U9 297 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 SSU72Q9NP77 194 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 HCFC1R1Q9NWW0 138 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 XIRP2A4UGR9 3374 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 FAM237BA0A1B0GVD1 139 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 SNX3O60493 162 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 EFCAB14O75071 495 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 RGRP47804 291 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 GNA12Q03113 381 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 DLG2Q15700 870 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PARP15Q460N3 678 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 RNF187Q5TA31 235 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 KLHDC10Q6PID8 442 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 RANBP10Q6VN20 620 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CCNJLQ8IV13 435 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ARMC2Q8NEN0 867 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ARRDC2Q8TBH0 407 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ZNF75CPQ92670 426 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CDKL2Q92772 493 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PLD4Q96BZ4 506 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 SEMA3CQ99985 751 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 TCF25Q9BQ70 676 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PDFQ9HBH1 243 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ZNF358Q9NW07 568 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 UXTQ9UBK9 157 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CPQQ9Y646 472 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 MTCL1Q9Y4B5 1905 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CCDC195A0A1B0GUA6 201 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CCL16O15467 120 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PRAMEF11O60813 436 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 ARNTP27540 789 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 PPM1AP35813 382 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 MAPKAPK2P49137 400 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC18A1P54219 525 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 FPGSQ05932 587 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 IL10RBQ08334 325 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CES4AQ5XG92 561 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 LINGO4Q6UY18 593 aa12.92□□□□□ -0.34
VIPAS39-206ENST00000553888 CYS1Q717R9 158 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms