RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 OSBPL6Q9BZF3 934 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 PRDM12Q9H4Q4 367 aa12.45□□□□□ -0.42
SHMT2-207ENST00000553837 MYBPHLA2RUH7 354 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 C17orf102A2RUQ5 167 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 YJEFN3A6XGL0 299 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 BOLA2-SMG1P6H3BVE0 249 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 FBXO21O94952 628 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 CELF2O95319 508 aaKnown RBP12.44□□□□□ -0.42
SHMT2-207ENST00000553837 ZNF23P17027 643 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 CYP2B6P20813 491 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 S100A1P23297 94 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 MGAT1P26572 445 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 PSMB4P28070 264 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 HOXC8P31273 242 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 NOS2P35228 1153 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 GMPRP36959 345 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 TKTL1P51854 596 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 SESN2P58004 480 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-207ENST00000553837 ARPC4P59998 168 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 STEAP4Q687X5 459 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 ISLR2Q6UXK2 745 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 ZNF567Q8N184 647 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 ZMIZ2Q8NF64 920 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 TSPAN14Q8NG11 270 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 RIN3Q8TB24 985 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 KCTD13Q8WZ19 329 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 LPPQ93052 612 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 SERPINI1Q99574 410 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 SMOQ99835 787 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 RHOBTB2Q9BYZ6 727 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 DNAJC28Q9NX36 388 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 SEPT10Q9P0V9 454 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 DNAJC16Q9Y2G8 782 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 PSAT1Q9Y617 370 aa12.44□□□□□ -0.42
SHMT2-207ENST00000553837 HACD1B0YJ81 288 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 DCLK1O15075 740 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 XPOTO43592 962 aaKnown RBP12.43□□□□□ -0.42
SHMT2-207ENST00000553837 TRPA1O75762 1119 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 ALDH1A2O94788 518 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 GSRP00390 522 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 F7P08709 466 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-207ENST00000553837 PURAQ00577 322 aaKnown RBP12.43□□□□□ -0.42
SHMT2-207ENST00000553837 NIPAL4Q0D2K0 466 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 ITGA7Q13683 1181 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 ADGRE1Q14246 886 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 CES3Q6UWW8 571 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 NDUFAF2Q8N183 169 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 SCAIQ8N9R8 606 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 GIPC3Q8TF64 312 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 DEPDC1BQ8WUY9 529 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 SENP8Q96LD8 212 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 PHF12Q96QT6 1004 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 PAAF1Q9BRP4 392 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 MED10Q9BTT4 135 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 ULBP1Q9BZM6 244 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 WDR6Q9NNW5 1121 aaKnown RBP12.43□□□□□ -0.42
SHMT2-207ENST00000553837 RCOR3Q9P2K3 495 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-207ENST00000553837 STK39Q9UEW8 545 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 SQORQ9Y6N5 450 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 LOC100653049A0A140TA62 436 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 KCNK1O00180 336 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 MATN2O00339 956 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 KRT34O76011 436 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 TOMM70O94826 608 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 THRAP10827 490 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 HALP42357 657 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 GLUD2P49448 558 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 IDH3AP50213 366 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 FSCBQ5H9T9 825 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 C6orf52Q5T4I8 152 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 BSPRYQ5W0U4 402 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 PDPK2PQ6A1A2 396 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 LPCAT2Q7L5N7 544 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 AMIGO2Q86SJ2 522 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 TICAM1Q8IUC6 712 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 CCNYQ8ND76 341 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 COX4I2Q96KJ9 171 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 GAD1Q99259 594 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 CCT7Q99832 543 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 RTKNQ9BST9 563 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 NUF2Q9BZD4 464 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 LRRC4Q9HBW1 653 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 SYBUQ9NX95 663 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 SNX10Q9Y5X0 201 aa12.43□□□□□ -0.42
SHMT2-207ENST00000553837 ALDOAP04075 364 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 COX4I1P13073 169 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 NCF2P19878 526 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SLC1A6P48664 564 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CPT1AP50416 773 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CLCNKBP51801 687 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 GK3PQ14409 553 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 C16orf72Q14CZ0 275 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PAFAH1B3Q15102 231 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 STXBP5Q5T5C0 1151 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 C16orf46Q6P387 395 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CASC4Q6P4E1 433 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 ZCCHC23Q6ZST2 131 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 BHLHA9Q7RTU4 235 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PSTKQ8IV42 348 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SIX6OS1Q8N1H7 587 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms