RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 KCNK13Q9HB14 408 aa10.93□□□□□ -0.66
CLIP1-210ENST00000538120 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLIP1-210ENST00000538120 DLGAP2Q9P1A6 1054 aa10.93□□□□□ -0.66
CLIP1-210ENST00000538120 ARHGAP42A6NI28 874 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 NVLO15381 856 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 ADAM12O43184 909 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 NEFHP12036 1026 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 CPB1P15086 417 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 ACADSP16219 412 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MXRA7P84157 204 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 TAF10Q12962 218 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 C11orf91Q3C1V1 193 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 PLEKHG6Q3KR16 790 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 CERCAMQ5T4B2 595 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SNX30Q5VWJ9 437 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 FYB2Q5VWT5 728 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 ITPRIPL1Q6GPH6 555 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 PRSS55Q6UWB4 352 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 TIFABQ6ZNK6 161 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 LZTR1Q8N653 840 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 RTL3Q8N8U3 475 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 FBXO32Q969P5 355 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 FAM136AQ96C01 138 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 VWCEQ96DN2 955 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SPATA17Q96L03 361 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 NAT9Q9BTE0 207 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 VPS11Q9H270 941 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MANSC1Q9H8J5 431 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 CLIC5Q9NZA1 410 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 UBP1Q9NZI7 540 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 IL1RAPL1Q9NZN1 696 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 PSAT1Q9Y617 370 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 ERI2A8K979 691 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 TBX10O75333 385 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 CPA2P48052 419 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 KLC1Q07866 573 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 EFEMP1Q12805 493 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 DUSP4Q13115 394 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SEPT7Q16181 437 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MS4A13Q5J8X5 152 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 LGSNQ5TDP6 509 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MROH9Q5TGP6 573 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SLC39A5Q6ZMH5 540 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 ANKRD33Q7Z3H0 272 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 TMEM135Q86UB9 458 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SPPL2BQ8TCT7 592 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MTBPQ96DY7 904 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 FAM111AQ96PZ2 611 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SRPK1Q96SB4 655 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SEPT5Q99719 369 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 APOL2Q9BQE5 337 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 BTBD10Q9BSF8 475 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 VN1R3Q9BXE9 311 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MRPL9Q9BYD2 267 aaKnown RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 HIPK3Q9H422 1215 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 PRDM5Q9NQX1 630 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-210ENST00000538120 SAR1AQ9NR31 198 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MKS1Q9NXB0 559 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 VANGL2Q9ULK5 521 aa10.92□□□□□ -0.66
CLIP1-210ENST00000538120 MYO18AQ92614 2054 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 MYO16Q9Y6X6 1858 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SCN5AQ14524 2016 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ZCWPW2A0A1B0GU75 182 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 MATN3O15232 486 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SMIM24O75264 130 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 KRT38O76015 456 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 HAUS5O94927 633 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 RTN3O95197 1032 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ZDHHC11BP0C7U3 371 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TROVE2P10155 538 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CCL5P13501 91 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SP100P23497 879 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SERPINB9P50453 376 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PAPOLAP51003 745 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 MRPS35P82673 323 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CCDC6Q16204 474 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TSNAXIP1Q2TAA8 658 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 MGAT5BQ3V5L5 792 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SPANXN3Q5MJ09 141 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PACS1Q6VY07 963 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ATPAF2Q8N5M1 289 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SPATA22Q8NHS9 363 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SCG3Q8WXD2 468 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 GLMNQ92990 594 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TTPALQ9BTX7 342 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PPP1R12CQ9BZL4 782 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TAS2R1Q9NYW7 299 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ARMCX1Q9P291 453 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PLLPQ9Y342 182 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 NUP205Q92621 2012 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 H7C4K7 107 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 COPEO14579 308 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 GYG2O15488 501 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CCDC22O60826 627 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CNTN5O94779 1100 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PEX11BO96011 259 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 IGLV3-27P01718 113 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ERVK-10P10266 1014 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms