RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ZSCAN1	Q8NBB4	408 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	LMX1A	Q8TE12	382 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	ASB12	Q8WXK4	309 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	EXTL1	Q92935	676 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC35C1	Q96A29	364 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	CCDC3	Q9BQI4	270 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	ZSWIM1	Q9BR11	485 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	FUCA2	Q9BTY2	467 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	STRADB	Q9C0K7	418 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	MUC3B	Q9H195	1237 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	TSPY26P	Q9H489	355 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	THAP9	Q9H5L6	903 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	FAM204A	Q9H8W3	233 aa		12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079	APOBEC3B	Q9UH17	382 aa	Known RBP	12.7	□□□□□ -0.38
CAPN1-223	ENST00000533079		A0A1B0GVL5	298 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	PMS2P1	A4D2B8	440 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079		D6RAR5	112 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	LMO7DN	F2Z398	122 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	PMM2	O15305	246 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	GLI1	P08151	1106 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	ADRB3	P13945	408 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	ITGB7	P26010	798 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC5A2	P31639	672 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	CCKBR	P32239	447 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	SYK	P43405	635 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	RECQL	P46063	649 aa	Predicted RBP	12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	PFN3	P60673	137 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	FKBP3	Q00688	224 aa	Known RBP	12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	GCNT1	Q02742	428 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	LRMP	Q12912	555 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	C5orf22	Q49AR2	442 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	C22orf39	Q6P5X5	142 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	CRTC1	Q6UUV9	634 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	RAB11FIP2	Q7L804	512 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC35F3	Q8IY50	421 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	PPM1K	Q8N3J5	372 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	FBXO39	Q8N4B4	442 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	OR52K2	Q8NGK3	314 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	TMEM159	Q96B96	161 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	FEM1C	Q96JP0	617 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	TSG101	Q99816	390 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC4A5	Q9BY07	1137 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	DDIT4	Q9NX09	232 aa		12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079	ARMCX3	Q9UH62	379 aa	Predicted RBP	12.69	□□□□□ -0.38
CAPN1-223	ENST00000533079		M0QYT0	321 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	RNF225	M0QZC1	329 aa	Predicted RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	TOR1B	O14657	336 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	NVL	O15381	856 aa	Known RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	MED7	O43513	233 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	NOBOX	O60393	691 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	PAK4	O96013	591 aa	Predicted RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	ANXA6	P08133	673 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	FAM87A	P0C7U9	286 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	GP1BB	P13224	206 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	UGT1A5	P35504	534 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	CDK17	Q00537	523 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	CETN1	Q12798	172 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	SGCG	Q13326	291 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	AUH	Q13825	339 aa	Known RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	FGL2	Q14314	439 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	COBLL1	Q53SF7	1204 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	ACBD5	Q5T8D3	534 aa	Predicted RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	TMEM110	Q86TL2	294 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	SETD3	Q86TU7	594 aa	Predicted RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	ARL10	Q8N8L6	244 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	OR6C4	Q8NGE1	309 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	GRIN3A	Q8TCU5	1115 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	RAB7B	Q96AH8	199 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	CCDC34	Q96HJ3	373 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	TMEM74	Q96NL1	305 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	KLF6	Q99612	283 aa	Predicted RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	LRRC61	Q9BV99	259 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC13A1	Q9BZW2	595 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	CEP44	Q9C0F1	390 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	SLC25A18	Q9H1K4	315 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	ADNP	Q9H2P0	1102 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	GOLPH3L	Q9H4A5	285 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	METTL14	Q9HCE5	456 aa	Known RBP	12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	EPB41L5	Q9HCM4	733 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	ASNSD1	Q9NWL6	643 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	VPS51	Q9UID3	782 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	KLF15	Q9UIH9	416 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	VANGL2	Q9ULK5	521 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	PCDHGA4	Q9Y5G9	962 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079	FADS3	Q9Y5Q0	445 aa		12.68	□□□□□ -0.38
CAPN1-223	ENST00000533079		E5RJQ4	531 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	RAD51B	O15315	384 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	P4HA2	O15460	535 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	TSPAN6	O43657	245 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	LEFTY1	O75610	366 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	RHOC	P08134	193 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	JMJD7	P0C870	316 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	CD82	P27701	267 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	L1CAM	P32004	1257 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	FMO5	P49326	533 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	THOP1	P52888	689 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	YPEL5	P62699	121 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	TLE1	Q04724	770 aa		12.67	□□□□□ -0.38
CAPN1-223	ENST00000533079	LRRC63	Q05C16	580 aa		12.67	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms