RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CABS1Q96KC9 395 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 ZNF599Q96NL3 588 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 SLC22A12Q96S37 553 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 CYP2S1Q96SQ9 504 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 PLLPQ9Y342 182 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 ASB3Q9Y575 518 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 GREM1O60565 184 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ALDOAP04075 364 aaKnown RBP21■□□□□ 0.95
VPS28-209ENST00000528142 ITGA2BP08514 1039 aa21■□□□□ 0.95
VPS28-209ENST00000528142 IRF1P10914 325 aa21■□□□□ 0.95
VPS28-209ENST00000528142 MBL2P11226 248 aaPredicted RBP21■□□□□ 0.95
VPS28-209ENST00000528142 CD86P42081 329 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ITKQ08881 620 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ITIH4Q14624 930 aa21■□□□□ 0.95
VPS28-209ENST00000528142 CHST9Q7L1S5 443 aa21■□□□□ 0.95
VPS28-209ENST00000528142 KCNMB4Q86W47 210 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ACMSDQ8TDX5 336 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ADAMTS19Q8TE59 1207 aa21■□□□□ 0.95
VPS28-209ENST00000528142 PTCD2Q8WV60 388 aaKnown RBP21■□□□□ 0.95
VPS28-209ENST00000528142 ZNF75CPQ92670 426 aaPredicted RBP21■□□□□ 0.95
VPS28-209ENST00000528142 ABHD8Q96I13 439 aa21■□□□□ 0.95
VPS28-209ENST00000528142 FAM111AQ96PZ2 611 aa21■□□□□ 0.95
VPS28-209ENST00000528142 AGAP2Q99490 1192 aa21■□□□□ 0.95
VPS28-209ENST00000528142 ZBED2Q9BTP6 218 aa21■□□□□ 0.95
VPS28-209ENST00000528142 MRM3Q9HC36 420 aaKnown RBP21■□□□□ 0.95
VPS28-209ENST00000528142 SMPD4Q9NXE4 827 aa21■□□□□ 0.95
VPS28-209ENST00000528142 CXCL14O95715 111 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 CHRNA4P43681 627 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 IFT88Q13099 833 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 POU6F1Q14863 301 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 HSP90AA5PQ58FG0 334 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 YTHDF3Q7Z739 585 aaKnown RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 NDUFAF2Q8N183 169 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 OR7D4Q8NG98 312 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 SP7Q8TDD2 431 aaPredicted RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 LRRC8CQ8TDW0 803 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 MCMBPQ9BTE3 642 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 LRRC3Q9BY71 257 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 ATXN3LQ9H3M9 355 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 C20orf96Q9NUD7 363 aaPredicted RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 PRKAG3Q9UGI9 489 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 TCAF1Q9Y4C2 921 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 MUSKO15146 869 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 LATS1O95835 1130 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 CRHR1P34998 444 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 ETFBP38117 255 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 SMAD3P84022 425 aaKnown RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 MSLNQ13421 630 aaPredicted RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 PCSK7Q16549 785 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 ARMC3Q5W041 872 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 TXNDC8Q6A555 127 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 KDELC2Q7Z4H8 507 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 SRLQ86TD4 932 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 HERC6Q8IVU3 1022 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 ARL14EPQ8N8R7 260 aaPredicted RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 RBBP8Q99708 897 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 DDX50Q9BQ39 737 aaKnown RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 PITPNM3Q9BZ71 974 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 SLC13A1Q9BZW2 595 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 TRPC7Q9HCX4 862 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 PCMTD2Q9NV79 361 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 TXNDC16Q9P2K2 825 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 TBC1D30Q9Y2I9 924 aa20.99■□□□□ 0.95
VPS28-209ENST00000528142 USP15Q9Y4E8 981 aaPredicted RBP20.99■□□□□ 0.95
VPS28-209ENST00000528142 A0A1B0GVM2 712 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 ILVBLA1L0T0 632 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 TTC24A2A3L6 582 aaPredicted RBP20.98■□□□□ 0.95
VPS28-209ENST00000528142 TCAF2A6NFQ2 919 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 CA8P35219 290 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 ZXDBP98169 803 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 SF3A3Q12874 501 aaKnown RBP eCLIP20.98■□□□□ 0.953e-6■■■■□ 25.6
VPS28-209ENST00000528142 PDPK2PQ6A1A2 396 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 FAM47EQ6ZV65 393 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 GAREM2Q75VX8 874 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 STRA8Q7Z7C7 330 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 SETD3Q86TU7 594 aaPredicted RBP20.98■□□□□ 0.95
VPS28-209ENST00000528142 TMC8Q8IU68 726 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 PPHLN1Q8NEY8 458 aaKnown RBP20.98■□□□□ 0.95
VPS28-209ENST00000528142 GRAMD1AQ96CP6 724 aa20.98■□□□□ 0.95
VPS28-209ENST00000528142 RRP15Q9Y3B9 282 aaKnown RBP20.98■□□□□ 0.95
VPS28-209ENST00000528142 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 WDR91A4D1P6 747 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 GFRA2O00451 464 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 TPP1O14773 563 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 KDELR3O43731 214 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 TSPAN3O60637 253 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 EDF1O60869 148 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 LIMK2P53671 638 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ZNF177Q13360 481 aaPredicted RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 ALG1LQ6GMV1 187 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 TMC7Q7Z402 723 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 SPATA21Q7Z572 469 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ANKS4BQ8N8V4 417 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 HERVK_113Q902F9 699 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ISL2Q96A47 359 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 RAD9AQ99638 391 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 POLR1EQ9GZS1 481 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 IQCGQ9H095 443 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 SLCO1B3Q9NPD5 702 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms