RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 SCTRP47872 440 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 ILDR1Q86SU0 546 aaPredicted RBP16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 LUZP2Q86TE4 346 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 KRT73Q86Y46 540 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 TCP10LQ8TDR4 215 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 MAML3Q96JK9 1138 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 SH3GL3Q99963 347 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 ADGRA3Q8IWK6 1321 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 CCDC154A6NI56 674 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 CNOT3O75175 753 aaKnown RBP16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 ATP6V1B1P15313 513 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 CLK2P49760 499 aaKnown RBP16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 SLC9A5Q14940 896 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 MPPE1Q53F39 396 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 LRRC55Q6ZSA7 311 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 VN1R5Q7Z5H4 357 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 RXFP1Q9HBX9 757 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 CFAP97Q9P2B7 532 aa16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 MRPS17Q9Y2R5 130 aaKnown RBP16.44■□□□□ 0.22
PCDHA3-201ENST00000522353 GRM6O15303 877 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 OR6A2O95222 327 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 IFNA16P05015 189 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 EIF2S1P05198 315 aaKnown RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CCDC159P0C7I6 412 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 SLURP2P0DP57 97 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 COPZ1P61923 177 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 C1DQ13901 141 aaKnown RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 POM121L1PQ3SYA9 428 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 IL27RAQ6UWB1 636 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 NLGN2Q8NFZ4 835 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TRPC4APQ8TEL6 797 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 RHBGQ9H310 441 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 A0A0B4J269 797 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 FGRP09769 529 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 SERPINB1P30740 379 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 FASTKQ14296 549 aaKnown RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 GPR141Q7Z602 305 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 MFSD14AQ96MC6 490 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 POMKQ9H5K3 350 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CHST7Q9NS84 486 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 YDJCA8MPS7 323 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 FGF1P05230 155 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 ADRA1DP25100 572 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 RPA3P35244 121 aaPredicted RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CDK18Q07002 472 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 PAGE2Q7Z2X7 111 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TMC3Q7Z5M5 1100 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 RERGQ96A58 199 aaPredicted RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 FCRL2Q96LA5 508 aaPredicted RBP16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CATSPER2Q96P56 530 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CAMTA1Q9Y6Y1 1673 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TREHO43280 583 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 ELFN1P0C7U0 828 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 CCR4P51679 360 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 NOMO3P69849 1222 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TAF10Q12962 218 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 FOXR2Q6PJQ5 311 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 RIPOR1Q6ZS17 1223 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TIFAQ96CG3 184 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 BTN2A3PQ96KV6 586 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 ABCG4Q9H172 646 aa16.43■□□□□ 0.22
PCDHA3-201ENST00000522353 TBL3Q12788 808 aaKnown RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 SPDYCQ5MJ68 293 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 CYP4X1Q8N118 509 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 ATXN2LQ8WWM7 1075 aaKnown RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 COPS8Q99627 209 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 IL1RAPL1Q9NZN1 696 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 FAM237AA0A1B0GTK4 181 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 NPAS4Q8IUM7 802 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 PROX1Q92786 737 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 KLQ9UEF7 1012 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 PCDHGC5Q9Y5F6 944 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3DA0A087WVF3 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3IA0A087WXS9 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3EA0A087X179 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3KA0A087X1G2 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3FA6NER0 549 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3LB9A6J9 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 CLDN5O00501 218 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3HP0C7X1 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 ICAM3P32942 547 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 RPL3P39023 403 aaKnown RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 CLK3P49761 638 aaKnown RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 PLK1P53350 603 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBX2Q13207 712 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3GQ6DHY5 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3CQ6IPX1 549 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 GET4Q7L5D6 327 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 ADAMTSL2Q86TH1 951 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 C7orf61Q8IZ16 206 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 TBC1D3Q8IZP1 549 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 BCL9LQ86UU0 1499 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 NEDD8-MDP1E9PL57 170 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 PHGDHO43175 533 aaKnown RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 INHAP05111 366 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 COX7A2P14406 83 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 FAAP100Q0VG06 881 aa16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 SHROOM1Q2M3G4 852 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 PPP1R26Q5T8A7 1209 aaPredicted RBP16.42■□□□□ 0.22
PCDHA3-201ENST00000522353 ZBTB49Q6ZSB9 765 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms