RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NFS1Q9Y697 457 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PARP4Q9UKK3 1724 aaKnown RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CNTNAP1P78357 1384 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TOPAZ1Q8N9V7 1692 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 SPDYE5A6NIY4 337 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TPD52L2O43399 206 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MGRN1O60291 552 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CSH1P0DML2 217 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CSH2P0DML3 217 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ANPEPP15144 967 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 LRPAP1P30533 357 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ICAM3P32942 547 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TPGS1Q6ZTW0 290 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CTU1Q7Z7A3 348 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM86AQ8N2M4 240 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MPP5Q8N3R9 675 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CLIC5Q9NZA1 410 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 UXTQ9UBK9 157 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF212Q9UDV6 495 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CPSF4O95639 269 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ETS2P15036 469 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 GRIA3P42263 894 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 BOP1Q14137 746 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MFSD4BQ5TF39 518 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 RRM2BQ7LG56 351 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MYO1HQ8N1T3 1032 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MTFMTQ96DP5 389 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 FOPNLQ96NB1 174 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF317Q96PQ6 595 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 AGAP2Q99490 1192 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 RNF39Q9H2S5 420 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 FZD8Q9H461 694 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 NMRK1Q9NWW6 199 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM216Q9P0N5 145 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MORF4L1Q9UBU8 362 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 FAM32AQ9Y421 112 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MYH7P12883 1935 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 PAGE1O75459 146 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MMP3P08254 477 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 SOAT1P35610 550 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ABL2P42684 1182 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CLCNKBP51801 687 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 GALNT3Q14435 633 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 PSMD5Q16401 504 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 UBAP2Q5T6F2 1119 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 SLC22A9Q8IVM8 553 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF567Q8N184 647 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 SLC35B2Q8TB61 432 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MRPS31Q92665 395 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 B3GALT6Q96L58 329 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ADGRE3Q9BY15 652 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 GRIP2Q9C0E4 1043 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 GPR88Q9GZN0 384 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 DTLQ9NZJ0 730 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 EIF3LQ9Y262 564 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MYO18AQ92614 2054 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 YJEFN3A6XGL0 299 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF839A8K0R7 811 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 CXorf49A8MYA2 514 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TK2O00142 265 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TOP3BO95985 862 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ITGALP20701 1170 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 HALP42357 657 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 GABRB2P47870 512 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ADARP55265 1226 aaKnown RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 OLIG2Q13516 323 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 MPP2Q14168 576 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF460Q14592 562 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 TTLL9Q3SXZ7 439 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 SPDYE7PQ495Y7 208 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 STK32CQ86UX6 486 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF398Q8TD17 642 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 FIZ1Q96SL8 496 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 NPAS2Q99743 824 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 EBF4Q9BQW3 602 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 SCHIP1Q9P0W5 487 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-204ENST00000519664 EGFL7Q9UHF1 273 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF229Q9UJW7 825 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 VPS9D1Q9Y2B5 631 aa11.84□□□□□ -0.51
SYNPO-204ENST00000519664 M0R3G1 203 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 TOMM70O94826 608 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 LRIG2O94898 1065 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SERPINA6P08185 405 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SKIV2L2P42285 1042 aaKnown RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 MRPS6P82932 125 aaKnown RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SREBF2Q12772 1141 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 PTPRNQ16849 979 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 TEX44Q53QW1 395 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 C1orf220Q5T0J3 134 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 RFWD3Q6PCD5 774 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 OR6K2Q8NGY2 324 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 DDX1Q92499 740 aaKnown RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 POLR1EQ9GZS1 481 aaKnown RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SDCBP2Q9H190 292 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 MRGBPQ9NV56 204 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 CDH9Q9ULB4 789 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 HBS1LQ9Y450 684 aaKnown RBP11.83□□□□□ -0.52
SYNPO-204ENST00000519664 KRT75O95678 551 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 LRG1P02750 347 aa11.83□□□□□ -0.52
SYNPO-204ENST00000519664 SMPD1P17405 629 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms