RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 PCNTO95613 3336 aa18.19■□□□□ 0.5
CCHCR1-228ENST00000509552 NEMP1O14524 444 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 IRAK2O43187 625 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 BUD23O43709 281 aaKnown RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 IGLV3-25P01717 112 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 STMN1P16949 149 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 PAMP19021 973 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 CCR1P32246 355 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 MTTPP55157 894 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 RAB10P61026 200 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 MAPRE1Q15691 268 aaKnown RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 PAN2Q504Q3 1202 aaKnown RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 TCHHL1Q5QJ38 904 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 BTBD8Q5XKL5 378 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 LRRC8EQ6NSJ5 796 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 ARHGAP12Q8IWW6 846 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 TMEM151AQ8N4L1 468 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 PPP2R3CQ969Q6 453 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 WDR55Q9H6Y2 383 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 ENTPD7Q9NQZ7 604 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 NEU3Q9UQ49 428 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 RGSL1A5PLK6 1076 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SLC22A2O15244 555 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 MAFKO60675 156 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SORBS2O94875 1100 aaKnown RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 CYP11A1P05108 521 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SBK3P0C264 359 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 AKR1A1P14550 325 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 TFEBP19484 476 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 PIK3R1P27986 724 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 GABRB3P28472 473 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 ITGA7Q13683 1181 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 TIGD7Q6NT04 549 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 C16orf89Q6UX73 402 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 MRPL10Q7Z7H8 261 aaKnown RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SETD3Q86TU7 594 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SERPINI1Q99574 410 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 MTG1Q9BT17 334 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 FSD1LQ9BXM9 530 aa18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 SENP6Q9GZR1 1112 aaPredicted RBP18.18■□□□□ 0.5
CCHCR1-228ENST00000509552 FAM95CA0A1B0GW59 222 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 PAGE1O75459 146 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 POMCP01189 267 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 EPHA3P29320 983 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 BRCC3P46736 316 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 CTBP1Q13363 440 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 LSM12Q3MHD2 195 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 OR52E8Q6IFG1 317 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 ESRP1Q6NXG1 681 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 DENND6AQ8IWF6 608 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 CENPLQ8N0S6 344 aaPredicted RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 THEM5Q8N1Q8 247 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 HIPK4Q8NE63 616 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 RP9Q8TA86 221 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 SCAMP5Q8TAC9 235 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 PPP1R36Q96LQ0 422 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 SLC39A8Q9C0K1 460 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 MRM3Q9HC36 420 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 TMLHEQ9NVH6 421 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 CDYLQ9Y232 598 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 TCAF1Q9Y4C2 921 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 AIM2O14862 343 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 CELF2O95319 508 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 CHRNA1P02708 482 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 HOXC13P31276 330 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 NUDT2P50583 147 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 KPNA2P52292 529 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 MPP1Q00013 466 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 EIF4EBP2Q13542 120 aaPredicted RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 GNASQ5JWF2 1037 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 MAP3K21Q5TCX8 1036 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 DENND5AQ6IQ26 1287 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 STON2Q8WXE9 905 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 MOCOSQ96EN8 888 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 NUF2Q9BZD4 464 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 KLHL4Q9C0H6 718 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 PDP2Q9P2J9 529 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 XPR1Q9UBH6 696 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 ZDHHC2Q9UIJ5 367 aa18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 PRPF19Q9UMS4 504 aaKnown RBP18.17■□□□□ 0.5
CCHCR1-228ENST00000509552 ADSLP30566 484 aaPredicted RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 PPARGP37231 505 aaPredicted RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 PEX19P40855 299 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 ARCN1P48444 511 aaKnown RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 SLC12A2P55011 1212 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 TSPY1Q01534 308 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 OVOS1Q6IE37 1185 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 GDF6Q6KF10 455 aaPredicted RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 SNX32Q86XE0 403 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 KYQ8NBH2 561 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 PDCD6IPQ8WUM4 868 aaKnown RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 ELMO2Q96JJ3 720 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 FCRL2Q96LA5 508 aaPredicted RBP18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 CCDC28BQ9BUN5 200 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 ACSS2Q9NR19 701 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 RBM22Q9NW64 420 aaKnown RBP eCLIP18.16■□□□□ 0.55e-6■■■■■ 30.4
CCHCR1-228ENST00000509552 MYADML2A6NDP7 307 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 TARM1B6A8C7 271 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 GRID2O43424 1007 aa18.16■□□□□ 0.5
CCHCR1-228ENST00000509552 SMIM24O75264 130 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms