RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 STK40Q8N2I9 435 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 RYBPQ8N488 228 aaPredicted RBP9.3□□□□□ -0.92
NUP54-207ENST00000508583 NPWQ8N729 165 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 LRRC57Q8N9N7 239 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 OR2AP1Q8NGE2 309 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 GANCQ8TET4 914 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 RAPGEF5Q92565 580 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 FOXJ1Q92949 421 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 FATE1Q969F0 183 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 OMDQ99983 421 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 HEPHQ9BQS7 1158 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 BTBD1Q9H0C5 482 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 PABPC3Q9H361 631 aaKnown RBP9.3□□□□□ -0.92
NUP54-207ENST00000508583 SGK2Q9HBY8 427 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 ITM2CQ9NQX7 267 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 AMACRQ9UHK6 382 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 SALL4Q9UJQ4 1053 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 TFR2Q9UP52 801 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 SMG5Q9UPR3 1016 aaKnown RBP9.3□□□□□ -0.92
NUP54-207ENST00000508583 PPP2R2CQ9Y2T4 447 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 HYOU1Q9Y4L1 999 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 R4GN57 208 aa9.3□□□□□ -0.92
NUP54-207ENST00000508583 DMDP11532 3685 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 LRRC72A6NJI9 287 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 C3orf70A6NLC5 250 aaPredicted RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 MTSS1O43312 755 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 BNIP3LO60238 219 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 FOXD2O60548 495 aaPredicted RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 RNASEH2AO75792 299 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 TJP3O95049 919 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CES1P23141 567 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CCNCP24863 283 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 NFKBIAP25963 317 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 SLC8A1P32418 973 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PTPN7P35236 360 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 HOXD12P35452 270 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CDKN2BP42772 138 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PSMD8P48556 350 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 NUMBP49757 651 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CCNHP51946 323 aaPredicted RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 RPL6Q02878 288 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 NSUN2Q08J23 767 aaKnown RBP eCLIP9.29□□□□□ -0.92
NUP54-207ENST00000508583 GALNT2Q10471 571 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 HNRNPDQ14103 355 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 MAP7D1Q3KQU3 841 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 SYCP2LQ5T4T6 812 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CFAP58Q5T655 872 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 MARC1Q5VT66 337 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 SPOCD1Q6ZMY3 1216 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 NT5DC3Q86UY8 548 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 ZSCAN30Q86W11 494 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CPNE8Q86YQ8 564 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 SPNS2Q8IVW8 549 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 ARHGAP12Q8IWW6 846 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CADM4Q8NFZ8 388 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 OR2A12Q8NGT7 310 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PCDH19Q8TAB3 1148 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PIP4K2CQ8TBX8 421 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 P3H4Q92791 437 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 RNF25Q96BH1 459 aaPredicted RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 HAUS1Q96CS2 278 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 HDAC11Q96DB2 347 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 ERLEC1Q96DZ1 483 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 FAM122AQ96E09 287 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 ZC3H10Q96K80 434 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 TSGA13Q96PP4 275 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 TUBGCP5Q96RT8 1024 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PHOX2BQ99453 314 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 TM6SF2Q9BZW4 377 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 KLC2Q9H0B6 622 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 KDM4CQ9H3R0 1056 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PDFQ9HBH1 243 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 LZTFL1Q9NQ48 299 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 FBXL12Q9NXK8 326 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 HECAQ9UBI9 543 aaPredicted RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 TRIM10Q9UDY6 481 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PPM1HQ9ULR3 514 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 CYP8B1Q9UNU6 501 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 FCF1Q9Y324 198 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 MFHAS1Q9Y4C4 1052 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 PCDHGA5Q9Y5G8 931 aa9.29□□□□□ -0.92
NUP54-207ENST00000508583 NYNRINQ9P2P1 1898 aaKnown RBP9.29□□□□□ -0.92
NUP54-207ENST00000508583 IGHV1OR15-9A0A0B4J2B8 117 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 A0A1W2PQ67 120 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 J3KR12 359 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 K7ERQ8 282 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 KPNA3O00505 521 aaPredicted RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 SMAD6O43541 496 aaKnown RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 HRO43593 1189 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 MFSD11O43934 449 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CST8O60676 142 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 LRP3O75074 770 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CA4P22748 312 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 ITGB7P26010 798 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 NUDT1P36639 197 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 MMP13P45452 471 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CSNK1DP48730 415 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 SUOXP51687 545 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 AP1S1P61966 158 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 LBRQ14739 615 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms