RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 IGFLR1Q9H665 355 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 CFAP99D6REC4 459 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 E7ESA3 106 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 LEFTY2O00292 366 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 GLP2RO95838 553 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 ITGALP20701 1170 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 GPNMBQ14956 572 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TSNAXIP1Q2TAA8 658 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 LYPLAL1Q5VWZ2 237 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 RFWD3Q6PCD5 774 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TMEM173Q86WV6 379 aaPredicted RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 STK40Q8N2I9 435 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 GPATCH11Q8N954 259 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 CCDC197Q8NCU1 140 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 BLOC1S5Q8TDH9 187 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 BCL7CQ8WUZ0 217 aaPredicted RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 CENPTQ96BT3 561 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 HCSTQ9UBK5 93 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SOX13Q9UN79 622 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 FAM50BQ9Y247 325 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 GMNCA6NCL1 334 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 KIF1CO43896 1103 aaKnown RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 RNASEH1O60930 286 aaKnown RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 RHOP08100 348 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 MTHFRP42898 656 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 MNX1P50219 401 aaPredicted RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 PRKAA2P54646 552 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 PKN3Q6P5Z2 889 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TPGS1Q6ZTW0 290 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 USP45Q70EL2 814 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 BNIPLQ7Z465 357 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 LCA5Q86VQ0 697 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 DNAJC5GQ8N7S2 189 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SPPL3Q8TCT6 385 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 CSGALNACT1Q8TDX6 532 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 PPP1R16AQ96I34 528 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 VPS11Q9H270 941 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TMEM120BA0PK00 339 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 BNIP3LO60238 219 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 GABBR2O75899 941 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 OAS1P00973 400 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 EPOP01588 193 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 RALBP11234 206 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CRABP2P29373 138 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 SSTR1P30872 391 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CD151P48509 253 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 RPL26P61254 145 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 ERVK-21P61565 698 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 TRADDQ15628 312 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 TXNDC8Q6A555 127 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 GRAMD4Q6IC98 578 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 AFTPHQ6ULP2 937 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CMTM8Q8IZV2 173 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 LPCAT1Q8NF37 534 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ARL8AQ96BM9 186 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ZBTB9Q96C00 473 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CHMP6Q96FZ7 201 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 IL12RB2Q99665 862 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 LRRC4CQ9HCJ2 640 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CORO1CQ9ULV4 474 aaPredicted RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 RPL26L1Q9UNX3 145 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 CCDC195A0A1B0GUA6 201 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 FAM72CH0Y354 149 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 INSIG1O15503 277 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ADAM12O43184 909 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CHN1P15882 459 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 USP10Q14694 798 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 FAM72AQ5TYM5 149 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ANKRD22Q5VYY1 191 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 FAM72DQ6L9T8 149 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ERAP2Q6P179 960 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 HTR3DQ70Z44 454 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CYS1Q717R9 158 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 RBM23Q86U06 439 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 FAM72BQ86X60 149 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 RNF168Q8IYW5 571 aaPredicted RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 CFAP52Q8N1V2 620 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 PEX13Q92968 403 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 GAS2L1Q99501 681 aaPredicted RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 NSUN3Q9H649 340 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 DUS2Q9NX74 493 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 SYF2O95926 243 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 CA3P07451 260 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 VAV1P15498 845 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 SAT1P21673 171 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 IVDP26440 423 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 TEAD2Q15562 447 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 DBN1Q16643 649 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 INO80DQ53TQ3 878 aaPredicted RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 KIAA0408Q6ZU52 694 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 GLT6D1Q7Z4J2 308 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 C14orf80Q86SX3 495 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 PRUNE1Q86TP1 453 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 HERPUD2Q9BSE4 406 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 CASS4Q9NQ75 786 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 IARS2Q9NSE4 1012 aaKnown RBP8.48□□□□□ -1.05
USP54-215ENST00000497106 SYBUQ9NX95 663 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 IGLV3-10A0A075B6K4 115 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 ERICH4A6NGS2 130 aa8.48□□□□□ -1.05
USP54-215ENST00000497106 E5RI56 91 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms