RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TBC1D3HP0C7X1 549 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 IL1R2P27930 398 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 SLC1A1P43005 524 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 HADHBP55084 474 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 NAP1L1P55209 391 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 CDH6P55285 790 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 RHOAP61586 193 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 KIF5AQ12840 1032 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TEAD4Q15561 434 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 IFI16Q16666 785 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 RSPO4Q2I0M5 234 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 DAB2IPQ5VWQ8 1189 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TBC1D3GQ6DHY5 549 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TBC1D3CQ6IPX1 549 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 LRRC8AQ8IWT6 810 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 PLPP6Q8IY26 295 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TBC1D3Q8IZP1 549 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 KCTD6Q8NC69 237 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 OR2AP1Q8NGE2 309 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 SKA1Q96BD8 255 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 CELF6Q96J87 481 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 LRIG1Q96JA1 1093 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 GDAP1L1Q96MZ0 367 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TM6SF2Q9BZW4 377 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 C6orf106Q9H6K1 298 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 ZDHHC6Q9H6R6 413 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 SP110Q9HB58 689 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 TMEM74BQ9NUR3 256 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 CWC15Q9P013 229 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 RCOR3Q9P2K3 495 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 HECAQ9UBI9 543 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 UBA2Q9UBT2 640 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 EIF2B4Q9UI10 523 aaKnown RBP16.67■□□□□ 0.26
SF3A1-209ENST00000496189 FRYLO94915 3013 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 NUP205Q92621 2012 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 ZNF292O60281 2723 aa16.67■□□□□ 0.26
SF3A1-209ENST00000496189 SDK1Q7Z5N4 2213 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 BTNL10A8MVZ5 291 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 BCAT2O15382 392 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 PTMAP06454 111 aaKnown RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 CCNHP51946 323 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 SLC25A11Q02978 314 aaKnown RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 PUM1Q14671 1186 aaKnown RBP eCLIP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 PDK2Q15119 407 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 POM121L1PQ3SYA9 428 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 ARSIQ5FYB1 569 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 KIAA0895LQ68EN5 471 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 TCEAL6Q6IPX3 200 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 NCEH1Q6PIU2 408 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 LEKR1Q6ZMV7 388 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 DPY19L3Q6ZPD9 716 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 CYP4V2Q6ZWL3 525 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 POLNQ7Z5Q5 900 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 ADAT2Q7Z6V5 191 aaKnown RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 AADATQ8N5Z0 425 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 ACRBPQ8NEB7 543 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 NSMCE1Q8WV22 266 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 DNASE2BQ8WZ79 361 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 TCEAL3Q969E4 200 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 RTKNQ9BST9 563 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 CALN1Q9BXU9 219 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 LRRC19Q9H756 370 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 TMEM9BQ9NQ34 198 aa16.66■□□□□ 0.26
SF3A1-209ENST00000496189 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-209ENST00000496189 LNP1A1A4G5 178 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 PATE3B3GLJ2 98 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 KRIT1O00522 736 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 PJA2O43164 708 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 LEFTY1O75610 366 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 TMCC1O94876 653 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 POP4O95707 220 aaKnown RBP16.65■□□□□ 0.26
SF3A1-209ENST00000496189 CD27P26842 260 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 MAOBP27338 520 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 PAPOLAP51003 745 aaKnown RBP16.65■□□□□ 0.26
SF3A1-209ENST00000496189 LIMK1P53667 647 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 ADPRHP54922 357 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 CNTN1Q12860 1018 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 DPYSQ14117 519 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 GRM3Q14832 879 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 FBXL19Q6PCT2 694 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 BBS5Q8N3I7 341 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 ZCCHC9Q8N567 271 aaKnown RBP16.65■□□□□ 0.26
SF3A1-209ENST00000496189 BIRC7Q96CA5 298 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 CSPG4P5Q96PW8 444 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 OSBPL1AQ9BXW6 950 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 TSGA10Q9BZW7 698 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 NOL6Q9H6R4 1146 aaKnown RBP16.65■□□□□ 0.26
SF3A1-209ENST00000496189 PCDH18Q9HCL0 1135 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 PREBQ9HCU5 417 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 SERGEFQ9UGK8 458 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 SARDHQ9UL12 918 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 REXO2Q9Y3B8 237 aaKnown RBP16.65■□□□□ 0.26
SF3A1-209ENST00000496189 WDR87Q6ZQQ6 2873 aa16.65■□□□□ 0.26
SF3A1-209ENST00000496189 TNRC6BQ9UPQ9 1833 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 PLRG1O43660 514 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 SPOPO43791 374 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 GDF9O60383 454 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 TCF4P15884 667 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 DRD3P35462 400 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 NUDT1P36639 197 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms