RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 EMC1Q8N766 993 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 ZNF557Q8N988 423 aaPredicted RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 KDM1BQ8NB78 822 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TTC17Q96AE7 1141 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 MYEOVQ96EZ4 313 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 ALG14Q96F25 216 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 CCDC42Q96M95 316 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 XPO6Q96QU8 1125 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 EIF3CQ99613 913 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 SELENOOQ9BVL4 669 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 LMAN1LQ9HAT1 526 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 CD248Q9HCU0 757 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 ZNHIT6Q9NWK9 470 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 DDIT4Q9NX09 232 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 DEC1Q9P2X7 70 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 UVRAGQ9P2Y5 699 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 PPARGC1AQ9UBK2 798 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 XPO7Q9UIA9 1087 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 LCMT1Q9UIC8 334 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 CLEC4EQ9ULY5 219 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SLC6A14Q9UN76 642 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 TBC1D30Q9Y2I9 924 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 HS3ST4Q9Y661 456 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 SCINQ9Y6U3 715 aa6.94□□□□□ -1.3
VPS52-219ENST00000493379 UTP20O75691 2785 aaKnown RBP6.94□□□□□ -1.3
VPS52-219ENST00000493379 HELZP42694 1942 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 ASCC3Q8N3C0 2202 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 ATMQ13315 3056 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 COL5A1P20908 1838 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 CCDC163A0A0D9SF12 145 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 GOLGA6L7A0A1B0GV03 622 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 PCNX2A6NKB5 2137 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 C4orf47A7E2U8 309 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 ADARB2-AS1A8MUL3 147 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 BTNL10A8MVZ5 291 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 WASH4PA8MWX3 477 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 GOLGA8SH3BPF8 625 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 ATG13O75143 517 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 PAGE1O75459 146 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 KAT7O95251 611 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 WISP1O95388 367 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 APOEP02649 317 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 CYBBP04839 570 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 HMBSP08397 361 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 H2AFZP0C0S5 128 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 ARAFP10398 606 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 IRF1P10914 325 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 TACR2P21452 398 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 L1CAMP32004 1257 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 HTR7P34969 479 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 HCAR3P49019 387 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 SGSHP51688 502 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 RNASE9P60153 205 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 GFPT1Q06210 699 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 MTAPQ13126 283 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 AUHQ13825 339 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 LRRC32Q14392 662 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 PIGHQ14442 188 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 EIF4HQ15056 248 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 E2F5Q15329 346 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 C15orf59Q2T9L4 293 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 RAB6CQ53S08 254 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 TDRD12Q587J7 1177 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 PERM1Q5SV97 790 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 CCDC122Q5T0U0 273 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 NAIF1Q69YI7 327 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 DNAJC24Q6P3W2 148 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 FBXL19Q6PCT2 694 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 ADAMTSL4Q6UY14 1074 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 TPGS1Q6ZTW0 290 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 H2AFVQ71UI9 128 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 CHST9Q7L1S5 443 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 SETD3Q86TU7 594 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 TMTC1Q8IUR5 882 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 TERB1Q8NA31 727 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 FAM71BQ8TC56 605 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 USP33Q8TEY7 942 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 EAF1Q96JC9 268 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 PRICKLE1Q96MT3 831 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 MDFIQ99750 246 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 BBS2Q9BXC9 721 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 TKTL2Q9H0I9 626 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 RAB6CQ9H0N0 254 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 THAP2Q9H0W7 228 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 CLEC4MQ9H2X3 399 aaPredicted RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 CNOT8Q9UFF9 292 aaKnown RBP6.93□□□□□ -1.3
VPS52-219ENST00000493379 NEU3Q9UQ49 428 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 OR51B4Q9Y5P0 310 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 PLXNB3Q9ULL4 1909 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 ZFHX3Q15911 3703 aa6.93□□□□□ -1.3
VPS52-219ENST00000493379 FLNCQ14315 2725 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 A0A0A6YYK5 440 aaPredicted RBP6.92□□□□□ -1.3
VPS52-219ENST00000493379 PRRT4C9JH25 899 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 NEDD8-MDP1E9PL57 170 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 K7ESF4 209 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 CCP110O43303 1012 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 CLDN11O75508 207 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 GJB6O95452 261 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 EGFP01133 1207 aa6.92□□□□□ -1.3
VPS52-219ENST00000493379 PF4P02776 101 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms