RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 KBTBD12Q3ZCT8 623 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 PPM1LQ5SGD2 360 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 STEAP4Q687X5 459 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 TLDC1Q6P9B6 456 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 TMC8Q8IU68 726 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MAB21L3Q8N8X9 362 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 USP33Q8TEY7 942 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 CYTH2Q99418 400 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 PIH1D1Q9NWS0 290 aaKnown RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MAFFQ9ULX9 164 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 CFAP73A6NFT4 308 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 SKAP2O75563 359 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 ADRA1DP25100 572 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MGAT1P26572 445 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 SLC8A1P32418 973 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 NTHL1P78549 312 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 NR1H3Q13133 447 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 ITPRIPL1Q6GPH6 555 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 ASRGL1Q7L266 308 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 OTOP3Q7RTS5 596 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 TFAP2DQ7Z6R9 452 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 ITIH5Q86UX2 942 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 C12orf76Q8N812 135 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 SLC44A1Q8WWI5 657 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 TCEAL4Q96EI5 215 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 CDK5RAP1Q96SZ6 601 aaKnown RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 NKX1-2Q9UD57 310 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-230ENST00000488543 MSRAQ9UJ68 235 aa12.37□□□□□ -0.43
HDAC6-230ENST00000488543 ARHGAP42A6NI28 874 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CXorf49A8MYA2 514 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 TRDMT1O14717 391 aaKnown RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 MATN3O15232 486 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 PEX11BO96011 259 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CCNB1P14635 433 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 KRT4P19013 534 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 KPNA1P52294 538 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 NDST2P52849 883 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CRADDP78560 199 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 NAA25Q14CX7 972 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 TRMT10BQ6PF06 316 aaKnown RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 KLHDC10Q6PID8 442 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 LVRNQ6Q4G3 990 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CIR1Q86X95 450 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 OR52K1Q8NGK4 314 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 DENND1AQ8TEH3 1009 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 OXNAD1Q96HP4 312 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 ZNF570Q96NI8 536 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 ATXN3LQ9H3M9 355 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 NPHS2Q9NP85 383 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CASS4Q9NQ75 786 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 ARHGEF3Q9NR81 526 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SYBUQ9NX95 663 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 DNMT3BQ9UBC3 853 aaKnown RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 DCTN4Q9UJW0 460 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 MAD1L1Q9Y6D9 718 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 DENND4CQ5VZ89 1909 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SDR42E2A6NKP2 422 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 HDCP19113 662 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 TACR2P21452 398 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 NRIP1P48552 1158 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SESN2P58004 480 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 C5orf22Q49AR2 442 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 RFWD3Q6PCD5 774 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 CHSY1Q86X52 802 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 DENND1CQ8IV53 801 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 GSDMBQ8TAX9 411 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 HMCESQ96FZ2 354 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 PRR11Q96HE9 360 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SMC6Q96SB8 1091 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SMG9Q9H0W8 520 aaKnown RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 SLC17A7Q9P2U7 560 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 UXTQ9UBK9 157 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-230ENST00000488543 MYLKQ15746 1914 aa12.36□□□□□ -0.43
HDAC6-230ENST00000488543 FAM159BA6NKW6 160 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 USP12O75317 370 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 STC2O76061 302 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 MBL2P11226 248 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 SLC6A4P31645 630 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 LRRC49Q8IUZ0 686 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 MAGEC3Q8TD91 643 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 ZFRQ96KR1 1074 aaKnown RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 SAMD11Q96NU1 681 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 TLE6Q9H808 572 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 GLOD4Q9HC38 313 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 IPO11Q9UI26 975 aaKnown RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 C15orf41Q9Y2V0 281 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 ASB3Q9Y575 518 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 CCDC195A0A1B0GUA6 201 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 ERI2A8K979 691 aaKnown RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 ACSL4O60488 711 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 HLA-DQB2P05538 268 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 SLC5A9Q2M3M2 681 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 ACBD5Q5T8D3 534 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 HHATQ5VTY9 493 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 RNF43Q68DV7 783 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 TIGD7Q6NT04 549 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-230ENST00000488543 POTEHQ6S545 545 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 OTOAQ7RTW8 1153 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 TDHQ8IZJ6 230 aa12.35□□□□□ -0.43
HDAC6-230ENST00000488543 CFAP52Q8N1V2 620 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms