RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC17A7Q9P2U7 560 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 COMMD3-BMI1R4GMX3 469 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 RECQL5O94762 991 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 PABPC1P11940 636 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 FEN1P39748 380 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 TGM3Q08188 693 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 KCTD19Q17RG1 926 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 PDZK1Q5T2W1 519 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 FAM171A1Q5VUB5 890 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 ANKRD52Q8NB46 1076 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 PURBQ96QR8 312 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 PRDM12Q9H4Q4 367 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 LRRC4CQ9HCJ2 640 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 SMIM31A0A1B0GVY4 71 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 NOL4O94818 638 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 GOT1P17174 413 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 TRIQKQ629K1 86 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 WSCD1Q658N2 575 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 ZNF621Q6ZSS3 439 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 FBXO30Q8TB52 745 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 TRPV2Q9Y5S1 764 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 AVILO75366 819 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 IGSF6O95976 241 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 CCNB1P14635 433 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 DGKAP23743 735 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 CD86P42081 329 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 SYT12Q8IV01 421 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 C10orf107Q8IVU9 208 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 C18orf25Q96B23 403 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 MECRQ9BV79 373 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 FGFBP2Q9BYJ0 223 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 SNX15Q9NRS6 342 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 EPN2O95208 641 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PGM3O95394 542 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 HPCAL1P37235 193 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ADCYAP1R1P41586 468 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 GPR15P49685 360 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 NAA20P61599 178 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 LACTB2Q53H82 288 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 DGKKQ5KSL6 1271 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 STXBP5Q5T5C0 1151 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TMC5Q6UXY8 1006 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 IL31RAQ8NI17 732 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 RNFT2Q96EX2 444 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 KREMEN1Q96MU8 473 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 CIPCQ9C0C6 399 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 REEP1Q9H902 201 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 LEF1Q9UJU2 399 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PLA2G4CQ9UP65 541 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 SESN1Q9Y6P5 492 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TMEM191CA6NGB0 347 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 SHOX2O60902 331 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 LYPLA1O75608 230 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ITGB5P18084 799 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PTPRAP18433 802 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 SPANXN2Q5MJ10 180 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 RIOX2Q8IUF8 465 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PHACTR4Q8IZ21 702 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TRIM8Q9BZR9 551 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 IFRD1O00458 451 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 CYP7B1O75881 506 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 FYNP06241 537 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 HOXC6P09630 235 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ALOX12P18054 663 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 WEE1P30291 646 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 BCL2L1Q07817 233 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 CRY1Q16526 586 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 KCTD21Q4G0X4 260 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ARMC12Q5T9G4 340 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TTC23Q5W5X9 447 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PACS1Q6VY07 963 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 CATSPERGQ6ZRH7 1159 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 SLC4A9Q96Q91 983 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 CDH19Q9H159 772 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PRPF19Q9UMS4 504 aaKnown RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TYMPP19971 482 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 EPHX2P34913 555 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 UGCGQ16739 394 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TRMT11Q7Z4G4 463 aaKnown RBP16.62■□□□□ 0.25
COL7A1-210ENST00000487017 PIGZQ86VD9 579 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 KIAA0319LQ8IZA0 1049 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 SLC4A5Q9BY07 1137 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TMEM216Q9P0N5 145 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 HPGDP15428 266 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 TFEBP19484 476 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ABRAXAS1Q6UWZ7 409 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 AADATQ8N5Z0 425 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 EFCAB3Q8N7B9 438 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 RCN3Q96D15 328 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 C19orf60Q96EN9 201 aa16.62■□□□□ 0.25
COL7A1-210ENST00000487017 ERBB2P04626 1255 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 XIAPP98170 497 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 BNIP2Q12982 314 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 KRT73Q86Y46 540 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 DPP10Q8N608 796 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 LGMNQ99538 433 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 OMDQ99983 421 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 HDHD2Q9H0R4 259 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 RAD21L1Q9H4I0 556 aa16.61■□□□□ 0.25
COL7A1-210ENST00000487017 SERHL2Q9H4I8 314 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms