RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RBM5P52756 815 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS50-216ENST00000484954 ART1P52961 327 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 IL13RA2Q14627 380 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 FBXO43Q4G163 708 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 SH2D4BQ5SQS7 431 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 TMEM268Q5VZI3 342 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 C16orf82Q7Z2V1 217 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 FSIP1Q8NA03 581 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 GOLGA1Q92805 767 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 ATOH1Q92858 354 aaPredicted RBP3.45□□□□□ -1.86
VPS50-216ENST00000484954 ZNF333Q96JL9 665 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 TM6SF1Q9BZW5 370 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 NPFFR1Q9GZQ6 430 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 C6orf106Q9H6K1 298 aaPredicted RBP3.45□□□□□ -1.86
VPS50-216ENST00000484954 PLSCR4Q9NRQ2 329 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 OCIAD1Q9NX40 245 aa3.45□□□□□ -1.86
VPS50-216ENST00000484954 A0A1B0GUV1 79 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 C17orf102A2RUQ5 167 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 LINC01553A4QN01 128 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 TMEM247A6NEH6 219 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 RNMTO43148 476 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 KRT86O43790 486 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 MYZAPP0CAP1 466 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 FCGR1AP12314 374 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 NAGAP17050 411 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 MT3P25713 68 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 PNPLA4P41247 253 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 AMTP48728 403 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 NUDT6P53370 316 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 CHAF1AQ13111 956 aaPredicted RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 THOC5Q13769 683 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 BYSLQ13895 437 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 CTTNQ14247 550 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 KRT81Q14533 505 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 PLCB4Q15147 1175 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 RUNDC3AQ59EK9 446 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 AADACL2Q6P093 401 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 C8orf82Q6P1X6 216 aaPredicted RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 MYLK4Q86YV6 388 aaPredicted RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 ZDHHC23Q8IYP9 409 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 TEX45Q8NA69 505 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 SETD9Q8NE22 299 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 OR6Y1Q8NGX8 325 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 OR14A16Q8NHC5 309 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 TMEM18Q96B42 140 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 TEFMQ96QE5 360 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 GFM1Q96RP9 751 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 MPHOSPH6Q99547 160 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 MSTO1Q9BUK6 570 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 CDT1Q9H211 546 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 IL25Q9H293 177 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 CHODLQ9H9P2 273 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 WDR6Q9NNW5 1121 aaKnown RBP3.44□□□□□ -1.86
VPS50-216ENST00000484954 TMLHEQ9NVH6 421 aa3.44□□□□□ -1.86
VPS50-216ENST00000484954 CCDC194A0A1B0GVG4 234 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 KRTAP9-6A8MVA2 160 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 B9A039 149 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 STX16-NPEPL1H3BU86 382 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 STX16O14662 325 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 CCNT1O60563 726 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 FAM155BO75949 473 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 TFRCP02786 760 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 CKMT1AP12532 417 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 ENO3P13929 434 aaPredicted RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 DCTDP32321 178 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 CHKAP35790 457 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 KCNJ4P48050 445 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 RPL36AP83881 106 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 ARHGAP8P85298 464 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 DSC1Q08554 894 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 COASYQ13057 564 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 HDAC1Q13547 482 aaPredicted RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 POSTNQ15063 836 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 RPE65Q16518 533 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 ME3Q16798 604 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 FAM76BQ5HYJ3 339 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 FAM83BQ5T0W9 1011 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 NAPEPLDQ6IQ20 393 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 MON1BQ7L1V2 547 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 SUGP1Q8IWZ8 645 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 OR4N2Q8NGD1 307 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 TMEM163Q8TC26 289 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 WFIKKN2Q8TEU8 576 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 RBM17Q96I25 401 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 TWSG1Q9GZX9 223 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 ZNF556Q9HAH1 456 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 TXLNGQ9NUQ3 528 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 GRHL1Q9NZI5 618 aa3.43□□□□□ -1.86
VPS50-216ENST00000484954 SRPRBQ9Y5M8 271 aaKnown RBP3.43□□□□□ -1.86
VPS50-216ENST00000484954 IGLV5-52A0A0A0MRZ9 124 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 IGHV4-28A0A0C4DH34 117 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 OR6C68A6NDL8 312 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 SERINC4A6NH21 518 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 SMTNL1A8MU46 457 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 BTBD18B2RXH4 712 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 ASAP2O43150 1006 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 ITM2AO43736 263 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 STRNO43815 780 aa3.42□□□□□ -1.86
VPS50-216ENST00000484954 DDNO94850 711 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms