RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NECAB2Q7Z6G3 386 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 CMC1Q7Z7K0 106 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TEX26Q8N6G2 289 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 ZNF419Q96HQ0 510 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 SPATA17Q96L03 361 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 FAM167BQ9BTA0 163 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 UBE2OQ9C0C9 1292 aaKnown RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 NMRAL1Q9HBL8 299 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 VPS45Q9NRW7 570 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TMEM161AQ9NX61 479 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 SFMBT1Q9UHJ3 866 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PHF24Q9UPV7 400 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PAPSS2O95340 614 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 IGLV3-27P01718 113 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 HLA-DQB2P05538 268 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 NUMBP49757 651 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PIK3R6Q5UE93 754 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 KDELC1Q6UW63 502 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 ZNF280BQ86YH2 543 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PLD6Q8N2A8 252 aaKnown RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 CEP295NLQ96MC4 621 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 SIK2Q9H0K1 926 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 C11orf49Q9H6J7 331 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 OXSMQ9NWU1 459 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 IL1RAPL1Q9NZN1 696 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TRIM13O60858 407 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 RTN3O95197 1032 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PGFP49763 221 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 SLC12A1Q13621 1099 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 MBTPS1Q14703 1052 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TRIP4Q15650 581 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 MAVSQ7Z434 540 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TMEM151AQ8N4L1 468 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 C2CD4AQ8NCU7 369 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 MRGPRX2Q96LB1 330 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 NUDCD1Q96RS6 583 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 NOL6Q9H6R4 1146 aaKnown RBP12.39□□□□□ -0.43
PTPRF-212ENST00000477970 DRGXA6NNA5 263 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 CRABP2P29373 138 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 IDH3AP50213 366 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 PAPOLAP51003 745 aaKnown RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 NET1Q7Z628 596 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 ATP6V0D2Q8N8Y2 350 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 C2orf15Q8WU43 125 aaKnown RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 MCUR1Q96AQ8 359 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 IMP4Q96G21 291 aaKnown RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 ZYG11BQ9C0D3 744 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 CDH19Q9H159 772 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 LRRC42Q9Y546 428 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 NUP205Q92621 2012 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 TARM1B6A8C7 271 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 F8W810 466 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 MSI1O43347 362 aaKnown RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 LYPLA1O75608 230 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 TM7SF2O76062 418 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 ARRB2P32121 409 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 RENBPP51606 427 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 TBX4P57082 545 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 RING1Q06587 406 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 BTG3Q14201 252 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 GRM3Q14832 879 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 TSNAXIP1Q2TAA8 658 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 ACCSLQ4AC99 568 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 EPGNQ6UW88 154 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 SPATA22Q8NHS9 363 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 GABPB2Q8TAK5 448 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 EBF4Q9BQW3 602 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 FICDQ9BVA6 458 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 RBM22Q9NW64 420 aaKnown RBP eCLIP12.38□□□□□ -0.435e-6■■■■■ 31.7
PTPRF-212ENST00000477970 ARMCX1Q9P291 453 aa12.38□□□□□ -0.43
PTPRF-212ENST00000477970 NKX1-2Q9UD57 310 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-212ENST00000477970 A0A087X1B8 175 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 SLC22A2O15244 555 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 ARNTP27540 789 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 SERPINB5P36952 375 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 VARS2Q5ST30 1063 aaKnown RBP12.37□□□□□ -0.43
PTPRF-212ENST00000477970 LIPMQ5VYY2 423 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 ATG14Q6ZNE5 492 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 C14orf80Q86SX3 495 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 STYXQ8WUJ0 223 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 RSRC1Q96IZ7 334 aaKnown RBP12.37□□□□□ -0.43
PTPRF-212ENST00000477970 BTN2A3PQ96KV6 586 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 GLT1D1Q96MS3 346 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 TRPV6Q9H1D0 765 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 IPO11Q9UI26 975 aaKnown RBP12.37□□□□□ -0.43
PTPRF-212ENST00000477970 MIA3Q5JRA6 1907 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 KITP10721 976 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 TPH1P17752 444 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 FGFR3P22607 806 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 ITGA9Q13797 1035 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 SLC14A2Q15849 920 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 MS4A13Q5J8X5 152 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 LMNTD2Q8IXW0 634 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 MAB21L3Q8N8X9 362 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 PDCD6IPQ8WUM4 868 aaKnown RBP12.37□□□□□ -0.43
PTPRF-212ENST00000477970 NSMCE1Q8WV22 266 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 RILPQ96NA2 401 aa12.37□□□□□ -0.43
PTPRF-212ENST00000477970 APOL2Q9BQE5 337 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms