RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PCIF1Q9H4Z3 704 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 APMAPQ9HDC9 416 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 KCND2Q9NZV8 630 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 MAP10Q9P2G4 905 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 SFMBT1Q9UHJ3 866 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 GPR34Q9UPC5 381 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 POLHQ9Y253 713 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 TMEM184BQ9Y519 407 aaPredicted RBP4.92□□□□□ -1.62
USP4-209ENST00000475873 PCDHB13Q9Y5F0 798 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 ATP8B3O60423 1300 aa4.92□□□□□ -1.62
USP4-209ENST00000475873 C19orf84I3L1E1 186 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 MCF2LO15068 1137 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 FAM13AO94988 1023 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 PCDH8O95206 1070 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 IGLV3-27P01718 113 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 FAM200BP0CF97 657 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 RALAP11233 206 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 BPIP17213 487 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 MPSTP25325 297 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 NFKBIAP25963 317 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 MAP4P27816 1152 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 CD1CP29017 333 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 IGFALSP35858 605 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 PSEN1P49768 467 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 NDST1P52848 882 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 ART1P52961 327 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 ITGA1P56199 1179 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 OR1D5P58170 312 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 MC1RQ01726 317 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 ART3Q13508 389 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 HLTFQ14527 1009 aaKnown RBP eCLIP4.91□□□□□ -1.62
USP4-209ENST00000475873 POSTNQ15063 836 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 DUOXA2Q1HG44 320 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 ALG11Q2TAA5 492 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 SKOR2Q2VWA4 1001 aaPredicted RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 PLEKHN1Q494U1 663 aaPredicted RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 MAP9Q49MG5 647 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 C14orf28Q4W4Y0 310 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 DUS1LQ6P1R4 473 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 CPLX2Q6PUV4 134 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 CRYBG2Q8N1P7 616 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 CFAP52Q8N1V2 620 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 OR52K2Q8NGK3 314 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 OR8D1Q8WZ84 308 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 KIAA1143Q96AT1 154 aaPredicted RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 RUFY1Q96T51 708 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 NUCKS1Q9H1E3 243 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 BRMS1Q9HCU9 246 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 MRPL40Q9NQ50 206 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 FOXD4L1Q9NU39 408 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 SLC39A1Q9NY26 324 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 NEU2Q9Y3R4 380 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 PCDHGA9Q9Y5G4 932 aaKnown RBP4.91□□□□□ -1.62
USP4-209ENST00000475873 RPS6KL1Q9Y6S9 549 aa4.91□□□□□ -1.62
USP4-209ENST00000475873 ANK2Q01484 3957 aa4.9□□□□□ -1.62
USP4-209ENST00000475873 FAM221AA4D161 298 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CDC14CA4D256 554 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 IGLON5A6NGN9 336 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 B4E171 279 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ATP9BO43861 1147 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 PFKFB2O60825 505 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CDKL5O76039 1030 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 STK17BO94768 372 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CPNE6O95741 557 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 STAU1O95793 577 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 F9P00740 461 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TNNC2P02585 160 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 THRAP10827 490 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 GLB1P16278 677 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ZNF28P17035 718 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 KLK2P20151 261 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 GARTP22102 1010 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 SCP2P22307 547 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TSPAN7P41732 249 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 HK3P52790 923 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 COPB1P53618 953 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 LIMK2P53671 638 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ZNF445P59923 1031 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TNNC1P63316 161 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CDK18Q07002 472 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 FOXD4Q12950 439 aaPredicted RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 ORC2Q13416 577 aaPredicted RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 MCM6Q14566 821 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CDSNQ15517 529 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 AMZ1Q400G9 498 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 FAXCQ5TGI0 409 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 FAM46CQ5VWP2 391 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 NKAIN2Q5VXU1 208 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TMEM198Q66K66 360 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 OGFOD3Q6PK18 319 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 LVRNQ6Q4G3 990 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 PARS2Q7L3T8 475 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 PIM3Q86V86 326 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TGIF2LYQ8IUE0 185 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 WDR49Q8IV35 697 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CARNMT1Q8N4J0 409 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 NECAB1Q8N987 351 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CHST14Q8NCH0 376 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 PLEKHO2Q8TD55 490 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 NOC3LQ8WTT2 800 aaKnown RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms