RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 BHMTQ93088 406 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ZNF333Q96JL9 665 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ZFP42Q96MM3 310 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 SLC2A13Q96QE2 648 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 GOLGA2P5Q9HBQ8 144 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PSMC3IPQ9P2W1 217 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 CDY1Q9Y6F8 540 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 C9IYK1 514 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 GOLGA8MH3BSY2 632 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 AREL1O15033 823 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TBC1D4O60343 1298 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 CLASP2O75122 1294 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 RPL22P35268 128 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 HCAR3P49019 387 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 CLCNKBP51801 687 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 OCRLQ01968 901 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 B3GNT6Q6ZMB0 384 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 EGFL6Q8IUX8 553 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PLD3Q8IV08 490 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PLD5Q8N7P1 536 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 RMDN1Q96DB5 314 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 COQ7Q99807 217 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 SH3GL1Q99961 368 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 FAM118BQ9BPY3 351 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TRIM54Q9BYV2 358 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 NSMCE4AQ9NXX6 385 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 CAB39Q9Y376 341 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 SESN1Q9Y6P5 492 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 M0QZQ0 153 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 MAP3K13O43283 966 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 SOD2P04179 222 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ACAT1P24752 427 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 ELF3P78545 371 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 ITGA9Q13797 1035 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 VARS2Q5ST30 1063 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 TXNRD3NBQ6F5E7 133 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 NAPEPLDQ6IQ20 393 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 AGMOQ6ZNB7 445 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ARFGAP1Q8N6T3 406 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 RTP4Q96DX8 246 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 FOPNLQ96NB1 174 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 THTPAQ9BU02 230 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 B3GNT5Q9BYG0 378 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 WFS1O76024 890 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TNFAIP8O95379 198 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CSF2RAP15509 400 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CES1P23141 567 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CTGFP29279 349 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TBL3Q12788 808 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 GRM3Q14832 879 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 PUS10Q3MIT2 529 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 CWF19L1Q69YN2 538 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 TMC5Q6UXY8 1006 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CLEC20AQ6ZU45 233 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TBC1D19Q8N5T2 526 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 MCUQ8NE86 351 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 SUSD6Q92537 303 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TIFAQ96CG3 184 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 HERPUD2Q9BSE4 406 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 BRD9Q9H8M2 597 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 RNPEPL1Q9HAU8 725 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ABCF3Q9NUQ8 709 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CIDEBQ9UHD4 219 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 VPS28Q9UK41 221 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 FZD10Q9ULW2 581 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 HBS1LQ9Y450 684 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 PCDHA11Q9Y5I1 949 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 A0A1W2PQ67 120 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TMEM189-UBE2V1I3L0A0 370 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 NRP1O14786 923 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 POLR2EP19388 210 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 MMP13P45452 471 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 SERPINB9P50453 376 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 DAOAP59103 153 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 POLR2LP62875 67 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 PRAMEP78395 509 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 AUHQ13825 339 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 UGP2Q16851 508 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 FAM46CQ5VWP2 391 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 CCSAPQ6IQ19 270 aaPredicted RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 TNIP2Q8NFZ5 429 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TRPC4APQ8TEL6 797 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 QKIQ96PU8 341 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP54-210ENST00000466048 PEBP4Q96S96 227 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 VAT1Q99536 393 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ZBTB18Q99592 522 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ULBP1Q9BZM6 244 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 KLHL4Q9C0H6 718 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 SAR1AQ9NR31 198 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 RNF19AQ9NV58 838 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ADA2Q9NZK5 511 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 DOLKQ9UPQ8 538 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 AAR2Q9Y312 384 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 GCATO75600 419 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 UBOX5O94941 541 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 ENO1P06733 434 aaKnown RBP7.77□□□□□ -1.17
USP54-210ENST00000466048 PSMC3P17980 439 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 TPSB2P20231 275 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 GABRR2P28476 465 aa7.77□□□□□ -1.17
USP54-210ENST00000466048 L1CAMP32004 1257 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms