RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	CTAGE6	Q86UF2	777 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF354C	Q86Y25	554 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	CTAGE4	Q8IX94	777 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SYCE1	Q8N0S2	351 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	PGBD3	Q8N328	593 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RNF10	Q8N5U6	811 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	NPW	Q8N729	165 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF366	Q8N895	744 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ATP11C	Q8NB49	1132 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	FAM76A	Q8TAV0	307 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	GAB3	Q8WWW8	586 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	PRCC	Q92733	491 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SPACA7	Q96KW9	195 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	MRGPRX1	Q96LB2	322 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RSPH9	Q9H1X1	276 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KLHL11	Q9NVR0	708 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	DUSP10	Q9Y6W6	482 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RPP40	O75818	363 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	CD48	P09326	243 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	PXN	P49023	591 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	NHLH1	Q02575	133 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ATP13A4	Q4VNC1	1196 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ANKRD20A8P	Q5CZ79	823 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF776	Q68DI1	518 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	C22orf39	Q6P5X5	142 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	YTHDF3	Q7Z739	585 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	TMPRSS6	Q8IU80	811 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ARHGAP12	Q8IWW6	846 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KATNAL2	Q8IYT4	538 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	PCDH20	Q8N6Y1	951 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	LRRC57	Q8N9N7	239 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RNF217	Q8TC41	542 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RAPGEF5	Q92565	580 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ISG20	Q96AZ6	181 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	MKRN2	Q9H000	416 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SCML1	Q9UN30	329 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	HYOU1	Q9Y4L1	999 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	FANCM	Q8IYD8	2048 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	MACROD2	A1Z1Q3	448 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	GRID2IP	A4D2P6	1211 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	CTAGE9	A4FU28	777 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	EIF3H	O15372	352 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	PRAMEF11	O60813	436 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	MT-CO1	P00395	513 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	AMPD1	P23109	780 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	CTNNA1	P35221	906 aa	Known RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	NUMB	P49757	651 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	SFSWAP	Q12872	951 aa	Known RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	MMRN1	Q13201	1228 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	ACCSL	Q4AC99	568 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	INO80D	Q53TQ3	878 aa	Predicted RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	LINGO4	Q6UY18	593 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	LRRC49	Q8IUZ0	686 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	PCDH19	Q8TAB3	1148 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	MAGEC3	Q8TD91	643 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	OR8D1	Q8WZ84	308 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	PTPRN2	Q92932	1015 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	SIPA1	Q96FS4	1042 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	RBM41	Q96IZ5	413 aa	Known RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	CELF6	Q96J87	481 aa	Known RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940	TPSD1	Q9BZJ3	242 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	SLC39A8	Q9C0K1	460 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	GOLPH3	Q9H4A6	298 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	RAPGEFL1	Q9UHV5	662 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.28	□□□□□ -0.6
APTX-209	ENST00000460940		R4GN57	208 aa		11.28	□□□□□ -0.6
APTX-209	ENST00000460940	C3orf70	A6NLC5	250 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	PROB1	E7EW31	1015 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	DFFA	O00273	331 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ADH1B	P00325	375 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	IGLV3-19	P01714	112 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ACADM	P11310	421 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ZFX	P17010	805 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	CTNNA2	P26232	953 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	P2RY2	P41231	377 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	RECQL	P46063	649 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	PAPOLA	P51003	745 aa	Known RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	RPS14	P62263	151 aa	Known RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	RFTN1	Q14699	578 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	PAFAH1B3	Q15102	231 aa	Known RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940		Q6ZVU0	165 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	PLPP6	Q8IY26	295 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF599	Q96NL3	588 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	RNF157	Q96PX1	679 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	SP110	Q9HB58	689 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	PDF	Q9HBH1	243 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ETNK2	Q9NVF9	386 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	USP36	Q9P275	1121 aa	Known RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	UBA2	Q9UBT2	640 aa	Predicted RBP	11.27	□□□□□ -0.6
APTX-209	ENST00000460940	TRIM10	Q9UDY6	481 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	WDFY4	Q6ZS81	3184 aa		11.27	□□□□□ -0.6
APTX-209	ENST00000460940	ANKRD33B	A6NCL7	494 aa		11.27	□□□□□ -0.61
APTX-209	ENST00000460940	MIF4GD	A9UHW6	222 aa	Known RBP	11.27	□□□□□ -0.61
APTX-209	ENST00000460940		K7ERQ8	282 aa		11.27	□□□□□ -0.61
APTX-209	ENST00000460940	MCF2L	O15068	1137 aa		11.27	□□□□□ -0.61
APTX-209	ENST00000460940	SMAD6	O43541	496 aa	Known RBP	11.27	□□□□□ -0.61
APTX-209	ENST00000460940	KIAA0754	O94854	1291 aa		11.27	□□□□□ -0.61
APTX-209	ENST00000460940	TMCC1	O94876	653 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms