RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 C5AR1P21730 350 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 PAPOLAP51003 745 aaKnown RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 VAV2P52735 878 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 RPL6Q02878 288 aaKnown RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 INO80DQ53TQ3 878 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 TMCO3Q6UWJ1 677 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 LEKR1Q6ZMV7 388 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 PLPP6Q8IY26 295 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 CALR3Q96L12 384 aaKnown RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 ZNF670Q9BS34 389 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 TNKS2Q9H2K2 1166 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 FBXL12Q9NXK8 326 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 EVLQ9UI08 416 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 NCKAP1Q9Y2A7 1128 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 ALG6Q9Y672 507 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 FRYQ5TBA9 3013 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 ADAMTS9Q9P2N4 1935 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 BTNL10A8MVZ5 291 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 GIPC1O14908 333 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 COMTP21964 271 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 KCNA4P22459 653 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 KDELR1P24390 212 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 RECQLP46063 649 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-202ENST00000452372 PSMD8P48556 350 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 MMRN1Q13201 1228 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 ANKRD20A8PQ5CZ79 823 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 CARD16Q5EG05 197 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 FAM46CQ5VWP2 391 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 ARMCX6Q7L4S7 300 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 RHOT1Q8IXI2 618 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 ZNF419Q96HQ0 510 aaPredicted RBP20.3■□□□□ 0.84
COL9A3-202ENST00000452372 CALN1Q9BXU9 219 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 LACRTQ9GZZ8 138 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 KLHL11Q9NVR0 708 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 SALL4Q9UJQ4 1053 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 PILRBQ9UKJ0 227 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 SARDHQ9UL12 918 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 MFHAS1Q9Y4C4 1052 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 DUSP10Q9Y6W6 482 aa20.3■□□□□ 0.84
COL9A3-202ENST00000452372 J3KR12 359 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 SPOPO43791 374 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 PRAMEF11O60813 436 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 ITPKAP23677 461 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 CHRNA3P32297 505 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 ZFYVE27Q5T4F4 411 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 PEAR1Q5VY43 1037 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-202ENST00000452372 C11orf63Q6NUN7 778 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 DPY19L3Q6ZPD9 716 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 FAM124AQ86V42 546 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 SYT12Q8IV01 421 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 TXLNBQ8N3L3 684 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 DEFB119Q8N690 84 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 CHST14Q8NCH0 376 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 TMIEQ8NEW7 156 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 CADM4Q8NFZ8 388 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 TPCN2Q8NHX9 752 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 PCDH19Q8TAB3 1148 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 PIP4K2CQ8TBX8 421 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 RAPGEF5Q92565 580 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 FAF2Q96CS3 445 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 OMDQ99983 421 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 GPR174Q9BXC1 333 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 BTBD1Q9H0C5 482 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 PDFQ9HBH1 243 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 SGK2Q9HBY8 427 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 HYOU1Q9Y4L1 999 aa20.29■□□□□ 0.84
COL9A3-202ENST00000452372 A0A1W2PP55 124 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 C1QTNF3-AMACRE9PGA6 284 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 DFFAO00273 331 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 TMCC1O94876 653 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 GSRP00390 522 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 PRNPP04156 253 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 CTSLP07711 333 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 ACSL1P33121 698 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 SERPINB6P35237 376 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 DNA2P51530 1060 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 IL10RBQ08334 325 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 PSAPL1Q6NUJ1 521 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 KIAA1328Q86T90 577 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 TP53INP2Q8IXH6 220 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 HDDC3Q8N4P3 179 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 AADATQ8N5Z0 425 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 NETO2Q8NC67 525 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 GANCQ8TET4 914 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 FOXJ1Q92949 421 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 HEPHQ9BQS7 1158 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 TMEM9BQ9NQ34 198 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 DDX56Q9NY93 547 aaKnown RBP20.28■□□□□ 0.84
COL9A3-202ENST00000452372 HECAQ9UBI9 543 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-202ENST00000452372 UBA2Q9UBT2 640 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-202ENST00000452372 SERGEFQ9UGK8 458 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 IL36AQ9UHA7 158 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 IPO11Q9UI26 975 aaKnown RBP20.28■□□□□ 0.84
COL9A3-202ENST00000452372 FZD4Q9ULV1 537 aa20.28■□□□□ 0.84
COL9A3-202ENST00000452372 KNL1Q8NG31 2342 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 ZNF487B1APH4 448 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 RNASEH2AO75792 299 aaKnown RBP20.27■□□□□ 0.84
COL9A3-202ENST00000452372 CCNHP51946 323 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-202ENST00000452372 SNRPD1P62314 119 aaKnown RBP20.27■□□□□ 0.84
COL9A3-202ENST00000452372 SHC2P98077 582 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms