RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 BBS5Q8N3I7 341 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ALLCQ8N6M5 410 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 RPLP0P6Q8NHW5 317 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 C1orf54Q8WWF1 131 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ATG4AQ8WYN0 398 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CAPZA3Q96KX2 299 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 FAM118BQ9BPY3 351 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 USP29Q9HBJ7 922 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 HAUS2Q9NVX0 235 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SMARCAL1Q9NZC9 954 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 DLGAP2Q9P1A6 1054 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 MMP17Q9ULZ9 603 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 TTC28Q96AY4 2481 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 EDDM13A0A1B0GTR0 161 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 TTC34A8MYJ7 566 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 CCDC188H7C350 402 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 KCNK1O00180 336 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 PDE2AO00408 941 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 ADAM23O75077 832 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 GSRP00390 522 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 PRKCHP24723 683 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 RBL1P28749 1068 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 MMP13P45452 471 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 WHAMMP3Q1A5X7 153 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 ACCSLQ4AC99 568 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 TEX44Q53QW1 395 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 DARS2Q6PI48 645 aaKnown RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 LEKR1Q6ZMV7 388 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 Q6ZS52 159 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 SYT13Q7L8C5 426 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF572Q7Z3I7 529 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 TXNDC5Q8NBS9 432 aaKnown RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 FLCNQ8NFG4 579 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 LRRN4Q8WUT4 740 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 PTPRN2Q92932 1015 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 RTP4Q96DX8 246 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 CINPQ9BW66 212 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 COL25A1Q9BXS0 654 aaPredicted RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 AP1M1Q9BXS5 423 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 CACNA2D2Q9NY47 1150 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 FCF1Q9Y324 198 aaKnown RBP11.77□□□□□ -0.53
SCN9A-204ENST00000452182 ACTL7AQ9Y615 435 aa11.77□□□□□ -0.53
SCN9A-204ENST00000452182 WASH3PC4AMC7 463 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 SGK1O00141 431 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 PHF2O75151 1096 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 KLF8O95600 359 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 PDGFBP01127 241 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 JCHAINP01591 159 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 EPHX1P07099 455 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CR2P20023 1033 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CES1P23141 567 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 PTPN3P26045 913 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CSNK1DP48730 415 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 FNTAP49354 379 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 SNRPD1P62314 119 aaKnown RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 WASHC5Q12768 1159 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CAMK2GQ13555 558 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 GAS6Q14393 721 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF235Q14590 738 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 RALGPS1Q5JS13 557 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ALG1LQ6GMV1 187 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 SPEM1Q8N4L4 309 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CNTD1Q8N815 330 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 TSEN2Q8NCE0 465 aaKnown RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 OR2AP1Q8NGE2 309 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 OR2A12Q8NGT7 310 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 MAGOHBQ96A72 148 aaKnown RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF419Q96HQ0 510 aaPredicted RBP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 TEKT5Q96M29 485 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CCDC114Q96M63 670 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 MGME1Q9BQP7 344 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 TMEM121Q9BTD3 319 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 FBRSQ9HAH7 460 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 CD248Q9HCU0 757 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ZDHHC4Q9NPG8 344 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 RBM22Q9NW64 420 aaKnown RBP eCLIP11.76□□□□□ -0.53
SCN9A-204ENST00000452182 LHX3Q9UBR4 397 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 TRHDEQ9UKU6 1024 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ATP8A1Q9Y2Q0 1164 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 MRFAP1Q9Y605 127 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 ATG2BQ96BY7 2078 aa11.76□□□□□ -0.53
SCN9A-204ENST00000452182 A0A1W2PQF6 199 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 C5orf60A6NFR6 353 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ALOX15BO15296 676 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 KCNN4O15554 427 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 STK10O94804 968 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 HLA-EP13747 358 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 HOXB2P14652 356 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CHRNA3P32297 505 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 MAPK8P45983 427 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 RHOAP61586 193 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 LMNB2Q03252 620 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CKAP4Q07065 602 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ZBTB17Q13105 803 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ELAVL3Q14576 367 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 STARD3Q14849 445 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CRY1Q16526 586 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CARD16Q5EG05 197 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 C9orf64Q5T6V5 341 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PKN3Q6P5Z2 889 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms