RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 DUOX1Q9NRD9 1551 aa4.39□□□□□ -1.71
HMGB3-203ENST00000430118 LAMA3Q16787 3333 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 A0A1W2PRQ8 180 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 WDR27A2RRH5 827 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TMEM200CA6NKL6 621 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TEX22C9J3V5 150 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 M0QYT0 321 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TNFSF14O43557 240 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 CCNT1O60563 726 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF623O75123 536 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 NCR1O76036 304 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 LETM1O95202 739 aaPredicted RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 MLYCDO95822 493 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TMIGD3P0DMS9 266 aaPredicted RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 UBL4AP11441 157 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 CREB1P16220 341 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 HOXD10P28358 340 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 MCM5P33992 734 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 PSMB10P40306 273 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RPS6KA3P51812 740 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RPL7AP62424 266 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 BLOC1S1P78537 153 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 CCDC15Q0P6D6 951 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RESTQ13127 1097 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 BMPR2Q13873 1038 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TBCEQ15813 527 aaPredicted RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ERCC6LQ2NKX8 1250 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RUNDC3AQ59EK9 446 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 CFAP58Q5T655 872 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 SUSD4Q5VX71 490 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 C16orf89Q6UX73 402 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 USP51Q70EK9 711 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ANKRD23Q86SG2 305 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ADGRG6Q86SQ4 1221 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 SFTPA1Q8IWL2 248 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 NKAIN3Q8N8D7 197 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 SRFBP1Q8NEF9 429 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 METTL6Q8TCB7 284 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 Q8TCH9 128 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 SSH3Q8TE77 659 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 FEM1CQ96JP0 617 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TTC14Q96N46 770 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TOX2Q96NM4 488 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 HERC2P3Q9BVR0 1158 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 TEX101Q9BY14 249 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ARHGAP39Q9C0H5 1083 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RANBP17Q9H2T7 1088 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF703Q9H7S9 590 aaPredicted RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 IL21RQ9HBE5 538 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 EIF2B3Q9NR50 452 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 GAR1Q9NY12 217 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 A0A0C4DFX4 3053 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 SH3TC1Q8TE82 1336 aa4.38□□□□□ -1.71
HMGB3-203ENST00000430118 RANBP2P49792 3224 aaKnown RBP4.38□□□□□ -1.71
HMGB3-203ENST00000430118 ANKRD36CQ5JPF3 1778 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 CUL9Q8IWT3 2517 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SYNDIG1LA6NDD5 238 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 AGAP5A6NIR3 686 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 C16orf96A6NNT2 1141 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 GRM8O00222 908 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF213O14771 459 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 MUSKO15146 869 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SEC14L2O76054 403 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 UFL1O94874 794 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 PEX11BO96011 259 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ALADP13716 330 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ABCD1P33897 745 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 COPB2P35606 906 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 PLA2G5P39877 138 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 MVDP53602 400 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 CDH15P55291 814 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 EIF3BP55884 814 aaKnown RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SP2Q02086 613 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 CDK18Q07002 472 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 EPS8Q12929 822 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 WTAPQ15007 396 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 TBCCQ15814 346 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 CYP1B1Q16678 543 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 TBC1D25Q3MII6 688 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 LRIT3Q3SXY7 679 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SUPT20HL1Q3ZLR7 823 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 RILPL1Q5EBL4 403 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 PLAC9Q5JTB6 97 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SLC10A5Q5PT55 438 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 TREML2Q5T2D2 321 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF648Q5T619 568 aaPredicted RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 DLK2Q6UY11 383 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SYNE3Q6ZMZ3 975 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ENOSF1Q7L5Y1 443 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 LAS2Q8IYD9 372 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF34Q8IZ26 560 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 BEND2Q8NDZ0 799 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 CPEB3Q8NE35 698 aaKnown RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 MYCBPAPQ8TBZ2 947 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 RAET1EQ8TD07 263 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 NEK9Q8TD19 979 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 NCSTNQ92542 709 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 USP6NLQ92738 828 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ATP2A3Q93084 1043 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 R3HDM4Q96D70 268 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms