RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PRUNE1Q86TP1 453 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 STK32CQ86UX6 486 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 POU5F2Q8N7G0 328 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 ATP6V0D2Q8N8Y2 350 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 KCTD6Q8NC69 237 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 SMARCD1Q96GM5 515 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 SENP8Q96LD8 212 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 POP1Q99575 1024 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 FBXO44Q9H4M3 255 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 POU2F3Q9UKI9 436 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 OR5F1O95221 314 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 NFICP08651 508 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 AMPD1P23109 780 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 CCL23P55773 120 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 ARHGAP15Q53QZ3 475 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 JADE3Q92613 823 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TMEM175Q9BSA9 504 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 TRMT13Q9NUP7 481 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 FLRT1Q9NZU1 646 aa9.95□□□□□ -0.82
USP54-205ENST00000424265 KIAA1522Q9P206 1035 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 UXTQ9UBK9 157 aaPredicted RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 MTO1Q9Y2Z2 717 aaKnown RBP9.95□□□□□ -0.82
USP54-205ENST00000424265 ATP6V1G2-DDX39BF2Z307 99 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 SYN3O14994 580 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 USP12O75317 370 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 PON2Q15165 354 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 MEA1Q16626 185 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CYP2A13Q16696 494 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CENPUQ71F23 418 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 BCL7CQ8WUZ0 217 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 MAML1Q92585 1016 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 FOXP3Q9BZS1 431 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 HMG20AQ9NP66 347 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 NGRNQ9NPE2 291 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 IGSF9Q9P2J2 1179 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 LSM7Q9UK45 103 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 COQ4Q9Y3A0 265 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 PCDHGA8Q9Y5G5 932 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 GREB1LQ9C091 1923 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 CASTOR2A6NHX0 329 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 PAHP00439 452 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 LRG1P02750 347 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 TYMPP19971 482 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ZNF200P98182 395 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 FPGSQ05932 587 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 DLG1Q12959 904 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ZNF846Q147U1 533 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 RFX6Q8HWS3 928 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 RELL1Q8IUW5 271 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 HERVK_113Q902F9 699 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 SHC3Q92529 594 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CCDC124Q96CT7 223 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 MRRFQ96E11 262 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 ATAD5Q96QE3 1844 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 A0A0U1RQF3 1178 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 SMIM28A0A1B0GU29 152 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 FGGP02679 453 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 GRK2P25098 689 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 SLC5A2P31639 672 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 HNRNPH3P31942 346 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 HNF1BP35680 557 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 PTPN9P43378 593 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 GALCP54803 685 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 TMPRSS15P98073 1019 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 USP41Q3LFD5 358 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CBWD6Q4V339 395 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CBWD3Q5JTY5 395 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CBWD5Q5RIA9 395 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ATG14Q6ZNE5 492 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 KLHDC9Q8NEP7 349 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ANGPTL6Q8NI99 470 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ASIC3Q9UHC3 531 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 NADKO95544 446 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 EEF1B2P24534 225 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 HADHAP40939 763 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 RPS3AP61247 264 aaKnown RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 NR1H3Q13133 447 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 MDH1BQ5I0G3 518 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 RALGPS2Q86X27 583 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 AHI1Q8N157 1196 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CLIP4Q8N3C7 705 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 DTX3Q8N9I9 347 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 CHPT1Q8WUD6 406 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 ZNF75CPQ92670 426 aaPredicted RBP9.94□□□□□ -0.82
USP54-205ENST00000424265 IFT22Q9H7X7 185 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 WBP1LQ9NX94 342 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 NAGPAQ9UK23 515 aa9.94□□□□□ -0.82
USP54-205ENST00000424265 J3QRK9 145 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 PSMD12O00232 456 aaPredicted RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 DPYSL4O14531 572 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 NCAM2O15394 837 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CKBP12277 381 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 KCNE1P15382 129 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 FDFT1P37268 417 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 ZNF135P52742 658 aaPredicted RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 PRPSAP1Q14558 356 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CLEC16AQ2KHT3 1053 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 C9orf57Q5W0N0 161 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CCDC149Q6ZUS6 474 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 TTC7BQ86TV6 843 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms