RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CBX4O00257 560 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ST8SIA6P61647 398 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 DEFB103AP81534 67 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 HTRA4P83105 476 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 KIAA0930Q6ICG6 404 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 LVRNQ6Q4G3 990 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 STRA8Q7Z7C7 330 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 TBC1D1Q86TI0 1168 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 RNF168Q8IYW5 571 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 CPXM2Q8N436 756 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 RYBPQ8N488 228 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 TDRD5Q8NAT2 981 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 GDAP1Q8TB36 358 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CDCA3Q99618 268 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 GEMIN8Q9NWZ8 242 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 SYBUQ9NX95 663 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ZDHHC7Q9NXF8 308 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 RIMKLBQ9ULI2 386 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 MAFKO60675 156 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 NDST3O95803 873 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 PYGLP06737 847 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CD151P48509 253 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 TTC19Q6DKK2 380 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 UGT3A1Q6NUS8 523 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CAND1Q86VP6 1230 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 WDR75Q8IWA0 830 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 C4orf33Q8N1A6 199 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 KLHL23Q8NBE8 558 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 RDH11Q8TC12 318 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 TASP1Q9H6P5 420 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 MKS1Q9NXB0 559 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 PKP3Q9Y446 797 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 TCAF1Q9Y4C2 921 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 USP15Q9Y4E8 981 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 IRAK3Q9Y616 596 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CPQQ9Y646 472 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 A0A087X1B8 175 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 SPAG7O75391 227 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 SOAT2O75908 522 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ALDH1A2O94788 518 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ATF6P18850 670 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CLCN5P51795 746 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 RPL26P61254 145 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 SLC7A9P82251 487 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 PCSK7Q16549 785 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 SYCP2LQ5T4T6 812 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 PLPP4Q5VZY2 271 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ZDHHC20Q5W0Z9 365 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 TAS1R1Q7RTX1 841 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 SPATA21Q7Z572 469 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 CCDC33Q8N5R6 958 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 OR6P1Q8NGX9 317 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ZNF398Q8TD17 642 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 E2F7Q96AV8 911 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 ZBTB9Q96C00 473 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 PWWP2AQ96N64 755 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 KIFC1Q9BW19 673 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 KLF16Q9BXK1 252 aaPredicted RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 MANSC1Q9H8J5 431 aa8.51□□□□□ -1.05
USP54-203ENST00000418501 AGO1Q9UL18 857 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 RPL26L1Q9UNX3 145 aaKnown RBP8.51□□□□□ -1.05
USP54-203ENST00000418501 TRIM43BA6NCK2 446 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TCP11X1B4DZS4 312 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 F5H423 210 aaPredicted RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 GRM6O15303 877 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 GLP2RO95838 553 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 POU2F2P09086 479 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CD86P42081 329 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 GPX6P59796 221 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 SNRPD1P62314 119 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 TMPRSS15P98073 1019 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 USP10Q14694 798 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 GPNMBQ14956 572 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 C5orf22Q49AR2 442 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 FASTKD1Q53R41 847 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 INO80DQ53TQ3 878 aaPredicted RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 LYPLAL1Q5VWZ2 237 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 PACS1Q6VY07 963 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 STK40Q8N2I9 435 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 UCMAQ8WVF2 138 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TRIM43Q96BQ3 446 aaPredicted RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 SEMA3CQ99985 751 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 EPB41L4BQ9H329 900 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CFAP97Q9P2B7 532 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 B4GALT3O60512 393 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 STC2O76061 302 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CCDC15Q0P6D6 951 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 GPR158Q5T848 1215 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 AFMIDQ63HM1 303 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 YAF2Q8IY57 180 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 SLC25A41Q8N5S1 370 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 WFIKKN2Q8TEU8 576 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 CLP1Q92989 425 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 CEP41Q9BYV8 373 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 SMPD4Q9NXE4 827 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 TMCO1Q9UM00 188 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 SNX10Q9Y5X0 201 aa8.5□□□□□ -1.05
USP54-203ENST00000418501 ATXN2Q99700 1313 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 STX7O15400 261 aaKnown RBP8.5□□□□□ -1.05
USP54-203ENST00000418501 SLC7A4O43246 635 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms