RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 UFM1P61960 85 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 TFCP2Q12800 502 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 AIMP1Q12904 312 aaKnown RBP2.7□□□□□ -1.98
MCF2-204ENST00000414978 CRHR2Q13324 411 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 RABL6Q3YEC7 729 aaPredicted RBP2.7□□□□□ -1.98
MCF2-204ENST00000414978 MEX3BQ6ZN04 569 aaKnown RBP2.7□□□□□ -1.98
MCF2-204ENST00000414978 TAS1R1Q7RTX1 841 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 CNTN4Q8IWV2 1026 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 FSIP1Q8NA03 581 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 MSANTD4Q8NCY6 345 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 FAM120BQ96EK7 910 aaKnown RBP2.7□□□□□ -1.98
MCF2-204ENST00000414978 KIRREL1Q96J84 757 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 TMEM209Q96SK2 561 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 SMOQ99835 787 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 SSBP4Q9BWG4 385 aaPredicted RBP2.7□□□□□ -1.98
MCF2-204ENST00000414978 PCED1AQ9H1Q7 454 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 EPHX3Q9H6B9 360 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 USP29Q9HBJ7 922 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 FBXO28Q9NVF7 368 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 HESX1Q9UBX0 185 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 SNX11Q9Y5W9 270 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 POMT1Q9Y6A1 747 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 MED23Q9ULK4 1368 aa2.7□□□□□ -1.98
MCF2-204ENST00000414978 ATG2AQ2TAZ0 1938 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SCAMP1O15126 338 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KINO60870 393 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 POMCP01189 267 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CCL5P13501 91 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KRT10P13645 584 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GNAT2P19087 354 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GSK3AP49840 483 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CDH8P55286 799 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 PTH1RQ03431 593 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.69□□□□□ -1.98
MCF2-204ENST00000414978 GOLGA8DPQ0D2H9 430 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 COG2Q14746 738 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MSMPQ1L6U9 139 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 INSCQ1MX18 579 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 KRBOX4Q5JUW0 171 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 AGBL4Q5VU57 503 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TRIM68Q6AZZ1 485 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DGAT2L7PQ6IED9 249 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 RASSF8Q8NHQ8 419 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CEP76Q8TAP6 659 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TMEM237Q96Q45 408 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 HSD3B7Q9H2F3 369 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 RANBP17Q9H2T7 1088 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 MMADHCQ9H3L0 296 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 SH2D4AQ9H788 454 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZWILCHQ9H900 591 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SIDT1Q9NXL6 827 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 IL1RAPL1Q9NZN1 696 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MRPL15Q9P015 296 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 JKAMPQ9P055 326 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SARDHQ9UL12 918 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 YBX2Q9Y2T7 364 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 MAP3K15Q6ZN16 1313 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ARHGAP10A1A4S6 786 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MBD3L4A6NDZ8 208 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 MBD3L3A6NE82 208 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 M0QZQ0 153 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TACC1O75410 805 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 LARGE1O95461 756 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ATP5BP06576 529 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 FURINP09958 794 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MATR3P43243 847 aaKnown RBP eCLIP2.69□□□□□ -1.98
MCF2-204ENST00000414978 MAPKAPK2P49137 400 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MFAP4P55083 255 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CAP1Q01518 475 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SLFN5Q08AF3 891 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZNF844Q08AG5 666 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GRAPQ13588 217 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZSCAN23Q3MJ62 389 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZNF568Q3ZCX4 644 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CCDC178Q5BJE1 867 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MPP7Q5T2T1 576 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 EFCAB12Q6NXP0 572 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TSSK4Q6SA08 328 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 C16orf89Q6UX73 402 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 CHST9Q7L1S5 443 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DNAAF1Q8NEP3 725 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DNERQ8NFT8 737 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 GRAPLQ8TC17 118 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 ABHD5Q8WTS1 349 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 DCLRE1CQ96SD1 692 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 CDX2Q99626 313 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 FSD1Q9BTV5 496 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ACAT2Q9BWD1 397 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 INTS2Q9H0H0 1204 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 SYNCQ9H7C4 482 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 PDE11AQ9HCR9 933 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 MBNL3Q9NUK0 354 aaKnown RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 HCFC1R1Q9NWW0 138 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 VAV3Q9UKW4 847 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SMC3Q9UQE7 1217 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 TRPV2Q9Y5S1 764 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 PARP14Q460N5 1801 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 ZSCAN5CA6NGD5 496 aaPredicted RBP2.69□□□□□ -1.98
MCF2-204ENST00000414978 FAM90A7PA6NKC0 464 aa2.69□□□□□ -1.98
MCF2-204ENST00000414978 SLC38A8A6NNN8 435 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms