RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 WASHC5Q12768 1159 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 SNX1Q13596 522 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 OASLQ15646 514 aaKnown RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 CCNG2Q16589 344 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 HSF5Q4G112 596 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 ATXN7L2Q5T6C5 722 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 TMCO4Q5TGY1 634 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 SDE2Q6IQ49 451 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 C22orf39Q6P5X5 142 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 DPY19L3Q6ZPD9 716 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 TRMT11Q7Z4G4 463 aaKnown RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 SPEM1Q8N4L4 309 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 CASKIN2Q8WXE0 1202 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 EXOC2Q96KP1 924 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 NSMCE3Q96MG7 304 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 QKIQ96PU8 341 aaKnown RBP eCLIP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 PSKH2Q96QS6 385 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 FAM129BQ96TA1 746 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 IL12RB2Q99665 862 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 TMEM121Q9BTD3 319 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 LHX3Q9UBR4 397 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 LAMA1P25391 3075 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 DNAH14Q0VDD8 3507 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 SDK1Q7Z5N4 2213 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 HACD1B0YJ81 288 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 MCF2LO15068 1137 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 TUBB4AP04350 444 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 GKP32189 559 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 RENBPP51606 427 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 MAXP61244 160 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 CAMK2GQ13555 558 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 RFTN1Q14699 578 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 NUMA1Q14980 2115 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 DARS2Q6PI48 645 aaKnown RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 HTR3CQ8WXA8 447 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 CEP44Q9C0F1 390 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 MKRN2Q9H000 416 aaKnown RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 RBM22Q9NW64 420 aaKnown RBP eCLIP16.2■□□□□ 0.182e-14■■■■□ 21.8
HMGA1-204ENST00000401473 SUN2Q9UH99 717 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 ANKRD36A6QL64 1941 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 BCLAF3A2AJT9 711 aaKnown RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 ZNF500O60304 480 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 ATG13O75143 517 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 PTPN3P26045 913 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 MMP13P45452 471 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 KCNJ1P48048 391 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 GDF10P55107 478 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 BYSLQ13895 437 aaKnown RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 IHHQ14623 411 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 E2F5Q15329 346 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 TEX44Q53QW1 395 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 EOGTQ5NDL2 527 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 MAML2Q8IZL2 1156 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 PCDH20Q8N6Y1 951 aaKnown RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 CHST14Q8NCH0 376 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 OR6K2Q8NGY2 324 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 MAIP1Q8WWC4 291 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 NKD2Q969F2 451 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-204ENST00000401473 SEPT10Q9P0V9 454 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 SEPT3Q9UH03 358 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 MUC6Q6W4X9 2439 aa16.19■□□□□ 0.18
HMGA1-204ENST00000401473 EDDM13A0A1B0GTR0 161 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 TARSL2A2RTX5 802 aaKnown RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 KIF2AO00139 706 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 KRIT1O00522 736 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 COPAP53621 1224 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 RHOAP61586 193 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 IFI35P80217 286 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SATB1Q01826 763 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 NSUN2Q08J23 767 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 CARD16Q5EG05 197 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 HEATR6Q6AI08 1181 aaKnown RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 MAMSTRQ6ZN01 415 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 METTL3Q86U44 580 aaKnown RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 STK40Q8N2I9 435 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 DTWD2Q8NBA8 298 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 OR2AP1Q8NGE2 309 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 AGAP3Q96P47 875 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 NAP1L3Q99457 506 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 CINPQ9BW66 212 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SLC6A17Q9H1V8 727 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 NT5MQ9NPB1 228 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SARDHQ9UL12 918 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SLC8A2Q9UPR5 921 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 INSIG1O15503 277 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 KCNN4O15554 427 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SYNCRIPO60506 623 aaKnown RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 URI1O94763 535 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 HLA-DQB2P05538 268 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 CTSLP07711 333 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 CR2P20023 1033 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 TTC27Q6P3X3 843 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 DRICH1Q6PGQ1 229 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 PLPP6Q8IY26 295 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 FAM71DQ8N9W8 422 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 NSMCE1Q8WV22 266 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 MGME1Q9BQP7 344 aa16.18■□□□□ 0.18
HMGA1-204ENST00000401473 SPATA6Q9NWH7 488 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-204ENST00000401473 ATP8A1Q9Y2Q0 1164 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms