RNA–Protein interactions for RNA: ENST00000389413.7

PTPRN2-201, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

TSL 1 (best) BASIC

Gene PTPRN2, Length 4,723 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-201ENST00000389413 FOLH1Q04609 750 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 ELAVL2Q12926 359 aaKnown RBP16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 DDX39BQ13838 428 aaKnown RBP16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 SPDYE7PQ495Y7 208 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 FAM45BPQ6NSW5 357 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 B3GNT6Q6ZMB0 384 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 EP400NLQ6ZTU2 488 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 PTGR2Q8N8N7 351 aaPredicted RBP16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 FAM45AQ8TCE6 357 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 ACTR8Q9H981 624 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 CATSPERZQ9NTU4 200 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 DNAJC28Q9NX36 388 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 TAS2R1Q9NYW7 299 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 MSCO60682 206 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 IL1R2P27930 398 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 FMO4P31512 558 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 TRIM16LQ309B1 348 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 WDR55Q9H6Y2 383 aaPredicted RBP16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 PTPRHQ9HD43 1115 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 TMEM161AQ9NX61 479 aa16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 MTF2Q9Y483 593 aaPredicted RBP16.32■□□□□ 0.2
PTPRN2-201ENST00000389413 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ALDH2P05091 517 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 FGFR3P22607 806 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 GPD2P43304 727 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 MAD2L1Q13257 205 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SLC44A4Q53GD3 710 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PPM1JQ5JR12 505 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PQLC1Q8N2U9 271 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 C12orf42Q96LP6 360 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 HGH1Q9BTY7 390 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ARHGEF4Q9NR80 690 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SOWAHBA6NEL2 793 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ZNF839A8K0R7 811 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 RAD51BO15315 384 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 RTN3O95197 1032 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 HNRNPLP14866 589 aaKnown RBP eCLIP16.31■□□□□ 0.22e-7■■■■■ 50.1
PTPRN2-201ENST00000389413 UQCRBP14927 111 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 GRIA3P42263 894 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 CRYBB1P53674 252 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ST8SIA6P61647 398 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SPATA6LQ8N4H0 392 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 MYLPFQ96A32 169 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ELOVL6Q9H5J4 265 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 FAM50BQ9Y247 325 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 COMMD3-BMI1R4GMX3 469 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PHRF1Q9P1Y6 1649 aaKnown RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 KIF13AQ9H1H9 1805 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 KATNA1O75449 491 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 KRT6AP02538 564 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 KRT6BP04259 564 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 KRT6CP48668 564 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PKN3Q6P5Z2 889 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 LGI2Q8N0V4 545 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 FIG4Q92562 907 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PARVBQ9HBI1 364 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.31■□□□□ 0.21e-6■■■■□ 21.1
PTPRN2-201ENST00000389413 MARCH2Q9P0N8 246 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PSMD13Q9UNM6 376 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 CCNT2O60583 730 aaKnown RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 TSPAN1O60635 241 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ECHS1P30084 290 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SREBF2Q12772 1141 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SLC10A6Q3KNW5 377 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 GLIS1Q8NBF1 620 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 SEMA4BQ9NPR2 832 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 CYLDQ9NQC7 956 aa16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 PRDM5Q9NQX1 630 aaPredicted RBP16.31■□□□□ 0.2
PTPRN2-201ENST00000389413 ZNF541Q9H0D2 1346 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 HOXA2O43364 376 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 GRIN3BO60391 1043 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ZNF7P17097 686 aaPredicted RBP16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 VAC14Q08AM6 782 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 STK32CQ86UX6 486 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 HPS6Q86YV9 775 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 CLIC5Q9NZA1 410 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 UBA2Q9UBT2 640 aaPredicted RBP16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 LNPEPQ9UIQ6 1025 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 COL6A2P12110 1019 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 DARSP14868 501 aaKnown RBP16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 MPSTP25325 297 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 RPL9P32969 192 aaKnown RBP16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 FAM171A1Q5VUB5 890 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ARHGAP22Q7Z5H3 698 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 CASP10Q92851 521 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ADAM2Q99965 735 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 CDH22Q9UJ99 828 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ZNF682O95780 498 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 AP2A1O95782 977 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 GUCA1CO95843 209 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 LIMK2P53671 638 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 NR1H2P55055 460 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 PGS1Q32NB8 556 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 CCDC185Q8N715 623 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 DCAKDQ8WVC6 231 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 SPASTQ9UBP0 616 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ZNF112Q9UJU3 913 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 PEX1O43933 1283 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 ATP6V1E1P36543 226 aa16.3■□□□□ 0.2
PTPRN2-201ENST00000389413 CCT8P50990 548 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms