RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 STARD13Q9Y3M8 1113 aa10.41□□□□□ -0.74
VPS53-202ENST00000389040 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.41□□□□□ -0.74
VPS53-202ENST00000389040 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 EXOC1LA0A1B0GW35 172 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 E9PAM4 449 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 TBL1XO60907 577 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 ATG13O75143 517 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 TULP3O75386 442 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 APODP05090 189 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 RHOQP17081 205 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 HOXC13P31276 330 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 ETFBP38117 255 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 OPRD1P41143 372 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 GALK1P51570 392 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 ATXN1P54253 815 aaKnown RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 ARL4CP56559 192 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 ZNF177Q13360 481 aaPredicted RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 DPYSL2Q16555 572 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 PPP6R3Q5H9R7 873 aaPredicted RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 HP1BP3Q5SSJ5 553 aaPredicted RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 MANEALQ5VSG8 457 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 GRAMD4Q6IC98 578 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 ZNF687Q8N1G0 1237 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 CHMP6Q96FZ7 201 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 CATSPERBQ9H7T0 1116 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 TBC1D17Q9HA65 648 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 EURLQ9NYK6 297 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 XPO7Q9UIA9 1087 aaKnown RBP10.4□□□□□ -0.74
VPS53-202ENST00000389040 AP4E1Q9UPM8 1137 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 SIT1Q9Y3P8 196 aa10.4□□□□□ -0.74
VPS53-202ENST00000389040 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 GOLGA6L7A0A1B0GV03 622 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 C5orf60A6NFR6 353 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 SHISA7A6NL88 538 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 WASH4PA8MWX3 477 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PRR33A8MZF0 331 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 H7C0C1 242 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 I6L893 689 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 TMEM63AO94886 807 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 LUC7L3O95232 432 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 KAT7O95251 611 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CISD3P0C7P0 127 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ATP5OP48047 213 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 MAPKAPK2P49137 400 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PLK1P53350 603 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 BASP1P80723 227 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 SULT2A1Q06520 285 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 SEMA3BQ13214 749 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CDH18Q13634 790 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CCINQ13939 588 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 RFWD3Q6PCD5 774 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 MICALCLQ6ZW33 695 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TRMT11Q7Z4G4 463 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 MFN1Q8IWA4 741 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CYP4X1Q8N118 509 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 AHI1Q8N157 1196 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PHTF2Q8N3S3 785 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TAB3Q8N5C8 712 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 CCDC185Q8N715 623 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PJA1Q8NG27 643 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PBXIP1Q96AQ6 731 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TBC1D31Q96DN5 1066 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CHFRQ96EP1 664 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 PRICKLE1Q96MT3 831 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 CCDC134Q9H6E4 229 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 VPS37BQ9H9H4 285 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ANLNQ9NQW6 1124 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ARHGEF4Q9NR80 690 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TBK1Q9UHD2 729 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 VANGL2Q9ULK5 521 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 HEY1Q9Y5J3 304 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 FAM169AQ9Y6X4 670 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TCF20Q9UGU0 1960 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 ATXN2Q99700 1313 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 MUC3AQ02505 3323 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 KIF26AQ9ULI4 1882 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 TMEM120BA0PK00 339 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CFAP69A5D8W1 941 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TBC1D3BA6NDS4 549 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 FAM170BA6NMN3 283 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 E7ESA3 106 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 H0Y626 953 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 SCAMP3O14828 347 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 BANF1O75531 89 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ATP5BP06576 529 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 BRAFP15056 766 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CREB1P16220 341 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 AOC1P19801 751 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 NRLP54845 237 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 RPS24P62847 133 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 MRPS21P82921 87 aaKnown RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 TMED2Q15363 201 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 QPCTQ16769 361 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 FNBP1LQ5T0N5 605 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ASTLQ6HA08 431 aaPredicted RBP10.39□□□□□ -0.75
VPS53-202ENST00000389040 CPLX4Q7Z7G2 160 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 TDRPQ86YL5 185 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 ANKMY2Q8IV38 441 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 CCDC13Q8IYE1 715 aa10.39□□□□□ -0.75
VPS53-202ENST00000389040 LZTR1Q8N653 840 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms