RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 PPIEQ9UNP9 301 aaKnown RBP18.24■□□□□ 0.51
COL18A1-202ENST00000355480 ACSL4O60488 711 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 HLA-DQA2P01906 255 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 ST13P50502 369 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 TRIM25Q14258 630 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 SAMD4BQ5PRF9 694 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 CDC73Q6P1J9 531 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 TMEM161BQ8NDZ6 487 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 OR6Y1Q8NGX8 325 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 WDR18Q9BV38 432 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 SLITRK2Q9H156 845 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 EPB41L4BQ9H329 900 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 TRIT1Q9H3H1 467 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 DDX20Q9UHI6 824 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 PDE5AO76074 875 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 CAPN1P07384 714 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 ALADP13716 330 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 ADRA1DP25100 572 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 POLD2P49005 469 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 ANKRD52Q8NB46 1076 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 HDAC7Q8WUI4 952 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 RABGEF1Q9UJ41 708 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 KPNA5O15131 536 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 CRYBB1P53674 252 aaPredicted RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 UXS1Q8NBZ7 420 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 BCLAF3A2AJT9 711 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 NTRK1P04629 796 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 PIK3R1P27986 724 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 RPL9P32969 192 aaKnown RBP18.23■□□□□ 0.51
COL18A1-202ENST00000355480 AADACL2Q6P093 401 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 SEMA3CQ99985 751 aa18.23■□□□□ 0.51
COL18A1-202ENST00000355480 AGMOQ6ZNB7 445 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 RNF44Q7L0R7 432 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 BTBD7Q9P203 1132 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 PCDHA11Q9Y5I1 949 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 DCCP43146 1447 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 C1orf232A0A0U1RR37 186 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 ATP9AO75110 1047 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 LBPP18428 481 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 ATP4AP20648 1035 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 TTPAP49638 278 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 ZNF605Q86T29 641 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 PTGR2Q8N8N7 351 aaPredicted RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 TMEM237Q96Q45 408 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 UNC5AQ6ZN44 842 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 MOB2Q70IA6 237 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 FUCA2Q9BTY2 467 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 ARIH1Q9Y4X5 557 aaPredicted RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 PDE2AO00408 941 aaPredicted RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 MEIS2O14770 477 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 SMAD3P84022 425 aaKnown RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 DCLRE1AQ6PJP8 1040 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 FAIM2Q9BWQ8 316 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 ZNF232Q9UNY5 417 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 SATB2Q9UPW6 733 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 H3BQF6 201 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 CD3EAPO15446 510 aaKnown RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 TLL1O43897 1013 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 GNRH1P01148 92 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 HTR1BP28222 390 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 LRPAP1P30533 357 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 RPA3P35244 121 aaPredicted RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 HK2P52789 917 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 RHBDL3P58872 404 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 CDK16Q00536 496 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 TRIQKQ629K1 86 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 GLIS3Q8NEA6 775 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 NMD3Q96D46 503 aaKnown RBP18.22■□□□□ 0.51
COL18A1-202ENST00000355480 S100A13Q99584 98 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 EXO5Q9H790 373 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 NRDE2Q9H7Z3 1164 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 RAB23Q9ULC3 237 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 SLC12A4Q9UP95 1085 aa18.22■□□□□ 0.51
COL18A1-202ENST00000355480 CENPXA8MT69 81 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 TRIM32Q13049 653 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ST13P5Q8NFI4 369 aaPredicted RBP18.21■□□□□ 0.51
COL18A1-202ENST00000355480 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.21■□□□□ 0.511e-6■■■□□ 16.6
COL18A1-202ENST00000355480 REEP1Q9H902 201 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 TPRKBQ9Y3C4 175 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 TRIM43BA6NCK2 446 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 TSPAN19P0C672 248 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 NDUFV1P49821 464 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ARMC4Q5T2S8 1044 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ZNF618Q5T7W0 954 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 RBM23Q86U06 439 aaKnown RBP18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ZDHHC13Q8IUH4 622 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 RMND5BQ96G75 393 aaPredicted RBP18.21■□□□□ 0.51
COL18A1-202ENST00000355480 CXorf56Q9H5V9 222 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 HIST1H2ABP04908 130 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ZNF24P17028 368 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 EPORP19235 508 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 GRIK5Q16478 980 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 HIST3H2AQ7L7L0 130 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 CACTIN-AS1Q8N1I8 211 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 HIST1H2ACQ93077 130 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 ZBTB10Q96DT7 871 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 MRIQ9BWK5 157 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 C6orf62Q9GZU0 229 aaPredicted RBP18.21■□□□□ 0.51
COL18A1-202ENST00000355480 C2CD2Q9Y426 696 aa18.21■□□□□ 0.51
COL18A1-202ENST00000355480 TSC22D2O75157 780 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms