RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SHROOM3Q8TF72 1996 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 RNF103O00237 685 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 MCF2LO15068 1137 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 ZNF185O15231 689 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 GJB3O75712 270 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 APBB3O95704 486 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 CCNB1P14635 433 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 GKP32189 559 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 HNRNPDQ14103 355 aaKnown RBP22.51■■□□□ 1.19
SHMT1-203ENST00000354098 ELAVL3Q14576 367 aaKnown RBP22.51■■□□□ 1.19
SHMT1-203ENST00000354098 ANGPT1Q15389 498 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 HEATR6Q6AI08 1181 aaKnown RBP22.51■■□□□ 1.19
SHMT1-203ENST00000354098 NYAP1Q6ZVC0 841 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 OR2AP1Q8NGE2 309 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 NSMCE1Q8WV22 266 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 PBKQ96KB5 322 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 BRD8Q9H0E9 1235 aa22.51■■□□□ 1.19
SHMT1-203ENST00000354098 RSPH9Q9H1X1 276 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-203ENST00000354098 BCCIPQ9P287 314 aaKnown RBP eCLIP22.51■■□□□ 1.19
SHMT1-203ENST00000354098 GALR2O43603 387 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 CTSLP07711 333 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 RECQLP46063 649 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 CCNHP51946 323 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 EIF3EP60228 445 aaKnown RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 ETF1P62495 437 aaKnown RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 PAPD7Q5XG87 772 aaKnown RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 RASSF3Q86WH2 238 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 MMAAQ8IVH4 418 aaKnown RBP22.5■■□□□ 1.19
SHMT1-203ENST00000354098 PGBD3Q8N328 593 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 TEX26Q8N6G2 289 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 FATE1Q969F0 183 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 VOPP1Q96AW1 172 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 PSKH2Q96QS6 385 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 CEP41Q9BYV8 373 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 SEPT3Q9UH03 358 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 SARDHQ9UL12 918 aa22.5■■□□□ 1.19
SHMT1-203ENST00000354098 TTC24A2A3L6 582 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 CTAGE9A4FU28 777 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 H7C0C1 242 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ALDH1A2O94788 518 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 GSRP00390 522 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 JCHAINP01591 159 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 MMP13P45452 471 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ATP5OP48047 213 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RENBPP51606 427 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 MAXP61244 160 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RPS14P62263 151 aaKnown RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SNRPD1P62314 119 aaKnown RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ZNF33AQ06730 810 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ZBTB17Q13105 803 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 XRCC4Q13426 336 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ZNF235Q14590 738 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SIX1Q15475 284 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SYT10Q6XYQ8 523 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RASGEF1CQ8N431 466 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RYBPQ8N488 228 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 TTC13Q8NBP0 860 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ATG4AQ8WYN0 398 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 OR8D1Q8WZ84 308 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 C16orf45Q96MC5 204 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 QKIQ96PU8 341 aaKnown RBP eCLIP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 TPSD1Q9BZJ3 242 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 NT5MQ9NPB1 228 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RBM22Q9NW64 420 aaKnown RBP eCLIP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SMARCAL1Q9NZC9 954 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SEPT10Q9P0V9 454 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 EVLQ9UI08 416 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 FBXO4Q9UKT5 387 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 ZNF318Q5VUA4 2279 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 INSIG1O15503 277 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 RBP3P10745 1247 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 CHRNA3P32297 505 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 LONRF2Q1L5Z9 754 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 MYLK3Q32MK0 819 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 SLC45A4Q5BKX6 768 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 PLPP6Q8IY26 295 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 GRIN3AQ8TCU5 1115 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 C1orf54Q8WWF1 131 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 CCDC114Q96M63 670 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 GDAP1L1Q96MZ0 367 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 CD93Q9NPY3 652 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 EBF1Q9UH73 591 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 PPM1HQ9ULR3 514 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 FARP1Q9Y4F1 1045 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-203ENST00000354098 WASF2Q9Y6W5 498 aa22.49■■□□□ 1.19
SHMT1-203ENST00000354098 WDFY4Q6ZS81 3184 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 HACD1B0YJ81 288 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 KRIT1O00522 736 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 IGSF6O95976 241 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 IL1BP01584 269 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 RBL1P28749 1068 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 FNTBP49356 437 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 NUBP1P53384 320 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 METAP1P53582 386 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 IFI35P80217 286 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-203ENST00000354098 ARSIQ5FYB1 569 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 KIAA1324Q6UXG2 1013 aaKnown RBP22.48■■□□□ 1.19
SHMT1-203ENST00000354098 CNTD1Q8N815 330 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 SIPA1Q96FS4 1042 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 NSMCE3Q96MG7 304 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms