RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 C9orf43Q8TAL5 461 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ZBTB8AQ96BR9 441 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 INPP4AQ96PE3 977 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ZIM3Q96PE6 472 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 PRMT7Q9NVM4 692 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 PSMD13Q9UNM6 376 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 PLD2O14939 933 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CYP3A4P08684 503 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CD96P40200 585 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 TMEM132EQ6IEE7 984 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ACAD10Q6JQN1 1059 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 IFI44Q8TCB0 444 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ST7LQ8TDW4 575 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CELF1Q92879 486 aaKnown RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 UPF1Q92900 1129 aaKnown RBP eCLIP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 PNKPQ96T60 521 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ATXN3LQ9H3M9 355 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 KIAA1522Q9P206 1035 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 LGALS13Q9UHV8 139 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 TRAPPC13A5PLN9 417 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CYP2J2P51589 502 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 TBX4P57082 545 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 SREBF2Q12772 1141 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ETV3LQ6ZN32 361 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 FNDC5Q8NAU1 212 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 UTP15Q8TED0 518 aaKnown RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CCDC107Q8WV48 283 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ANAPC16Q96DE5 110 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CITED4Q96RK1 184 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 MTRRQ9UBK8 725 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 POLR1AO95602 1720 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 HECW1Q76N89 1606 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 H0Y858 1186 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 NPPAP01160 153 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ATP1A1P05023 1023 aaKnown RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 PET100P0DJ07 73 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 WNT7BP56706 349 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 FGL2Q14314 439 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 FASTKD3Q14CZ7 662 aaKnown RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 LDLRAP1Q5SW96 308 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 LPCAT1Q8NF37 534 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 UBASH3BQ8TF42 649 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 ARMCX3Q9UH62 379 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 HSD17B2P37059 387 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CTBP2P56545 445 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 FRG1Q14331 258 aaKnown RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 DENND5AQ6IQ26 1287 aa3.81□□□□□ -1.8
SYNE2-202ENST00000344113 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.81□□□□□ -1.8
SYNE2-202ENST00000344113 BACH1O14867 736 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 NIPSNAP2O75323 286 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 P2RX3P56373 397 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ATP2C1P98194 919 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CTC1Q2NKJ3 1217 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KIF19Q2TAC6 998 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZNF410Q86VK4 478 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SLC7A5P1Q8MH63 180 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PKP4Q99569 1192 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CABP5Q9NP86 173 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PAK6Q9NQU5 681 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 PAQR5Q9NXK6 330 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ADGRL2O95490 1459 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SYCP2Q9BX26 1530 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ASXL3Q9C0F0 2248 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CIB4A0PJX0 185 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 EYA2O00167 538 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TNNI3P19429 210 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 FEN1P39748 380 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ETV6P41212 452 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 FKBP3Q00688 224 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SLC39A12Q504Y0 691 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SMUG1Q53HV7 270 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 DCP1BQ8IZD4 617 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 POMGNT2Q8NAT1 580 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZBED3Q96IU2 234 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 KNTC1P50748 2209 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ARHGEF11O15085 1522 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 WWP2O00308 870 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 IRS4O14654 1257 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TTLL1O95922 423 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MUTP22033 750 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 IL6STP40189 918 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 IRF5Q13568 498 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ZBTB8OSQ8IWT0 167 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 DEPDC4Q8N2C3 294 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SEMA6DQ8NFY4 1073 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 OR10R2Q8NGX6 335 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 GDPD5Q8WTR4 605 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SEPT5Q99719 369 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CCDC32Q9BV29 185 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MED28Q9H204 178 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 EHD4Q9H223 541 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 AP4E1Q9UPM8 1137 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 MFHAS1Q9Y4C4 1052 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 RFC4P35249 363 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 ARCN1P48444 511 aaKnown RBP3.8□□□□□ -1.8
SYNE2-202ENST00000344113 SLC29A2Q14542 456 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TCTE1Q5JU00 501 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 TREML1Q86YW5 311 aa3.8□□□□□ -1.8
SYNE2-202ENST00000344113 CCDC115Q96NT0 180 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms